FastQCFastQC Report
Wed 24 Jan 2018
Geoduck-5_S1_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-5_S1_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305913830
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGAAG627800.059.558231
TGCGCGA665900.058.893861
CGCCGAA681300.052.84911
GCGCTAG720100.051.320261
CCTTACG720400.050.493881
GGCGACT813500.050.141941
TCCGCGA637500.050.089938
GCCGGAT747400.049.959751
CGAAGCC789000.049.447971
GTGCGCA753400.049.100033
GTGCGAC820900.048.9481661
TAGGCGC795700.048.421221
GCTAGCG750650.048.3528331
CTCCGCG382700.048.3397037
AAGCCCG818800.047.5863531
GCGCTGA811000.047.5434761
AGGCTCG761450.047.46711
TGAGCCG790250.047.4067081
TCGACGG754300.046.8983461
GATCGCG675850.046.743231
Produced by FastQC (version 0.11.5)