FastQCFastQC Report
Wed 24 Jan 2018
Geoduck-5_S1_L002_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-5_S1_L002_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305913830
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCC8963775429.301635038860454No Hit
GGATGG8245685226.954274018928793No Hit
CCGATT7067712623.103606005651983No Hit
AATCAA5537981618.103076935096396No Hit
CGATTA3272270.10696705016572804No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)