supernova mkoutput (2.0.0) Copyright (c) 2017 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Mon Mar 05 16:10:41 2018 on n2211, pid=8471 [Jan 10 2018 18:00:04 7fba7b4] MakeFasta OUT_HEAD=/gscratch/srlab/sr320/analyses/0305b/duck4-mega \ DIR=/gscratch/scrubbed/sr320/0220/Geoduck/outs/assembly/a.base/gang/ \ micro/final FLAVOR=megabubbles MINSIZE=1000 ABBREV=True -------------------------------------------------------------------------------- version=1.9 style=2 Mon Mar 05 16:10:41 2018: loading assembly files Mon Mar 05 16:11:54 2018: cell reinsertion Mon Mar 05 16:13:12 2018: building lines-of-lines Mon Mar 05 16:13:14 2018: forming lines of lines Mon Mar 05 16:13:19 2018: found 1054223 lines, and 1043853 lines of lines Mon Mar 05 16:13:22 2018: writing the FASTA portion of output to /gscratch/srlab/sr320/analyses/0305b/duck4-mega.fasta writing 100 dots in 10 groups of 10: .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... writing gzipped object Mon Mar 05 16:26:53 2018: graph info final graph has 13895642 edges reinserted cells start at edge 5080242 33 cell(s) at dead-ends completed conversion in 16.2 minutes supernova mkoutput (2.0.0) Copyright (c) 2017 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Mon Mar 05 16:27:17 2018 on n2211, pid=5667 [Jan 10 2018 18:00:04 7fba7b4] MakeFasta OUT_HEAD=/gscratch/srlab/sr320/analyses/0305b/duck4-mega10k \ DIR=/gscratch/scrubbed/sr320/0220/Geoduck/outs/assembly/a.base/gang/ \ micro/final FLAVOR=megabubbles MINSIZE=10000 ABBREV=True -------------------------------------------------------------------------------- version=1.9 style=2 Mon Mar 05 16:27:17 2018: loading assembly files Mon Mar 05 16:28:29 2018: cell reinsertion Mon Mar 05 16:29:50 2018: building lines-of-lines Mon Mar 05 16:29:51 2018: forming lines of lines Mon Mar 05 16:29:58 2018: found 1054223 lines, and 1043853 lines of lines Mon Mar 05 16:30:02 2018: writing the FASTA portion of output to /gscratch/srlab/sr320/analyses/0305b/duck4-mega10k.fasta writing 100 dots in 10 groups of 10: .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... writing gzipped object Mon Mar 05 16:42:19 2018: graph info final graph has 13895642 edges reinserted cells start at edge 5080242 33 cell(s) at dead-ends completed conversion in 15 minutes supernova mkoutput (2.0.0) Copyright (c) 2017 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Mon Mar 05 16:42:44 2018 on n2211, pid=2804 [Jan 10 2018 18:00:04 7fba7b4] MakeFasta OUT_HEAD=/gscratch/srlab/sr320/analyses/0305b/duck4-p \ DIR=/gscratch/scrubbed/sr320/0220/Geoduck/outs/assembly/a.base/gang/ \ micro/final FLAVOR=pseudohap MINSIZE=1000 ABBREV=True -------------------------------------------------------------------------------- version=1.9 style=3 Mon Mar 05 16:42:44 2018: loading assembly files Mon Mar 05 16:43:54 2018: cell reinsertion Mon Mar 05 16:45:11 2018: building lines-of-lines Mon Mar 05 16:45:13 2018: forming lines of lines Mon Mar 05 16:45:20 2018: found 1054223 lines, and 1043853 lines of lines Mon Mar 05 16:45:23 2018: writing the FASTA portion of output to /gscratch/srlab/sr320/analyses/0305b/duck4-p.fasta writing 100 dots in 10 groups of 10: .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... writing gzipped object Mon Mar 05 16:57:45 2018: graph info final graph has 13895642 edges reinserted cells start at edge 5080242 33 cell(s) at dead-ends completed conversion in 15 minutes supernova mkoutput (2.0.0) Copyright (c) 2017 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Mon Mar 05 16:58:09 2018 on n2211, pid=32231 [Jan 10 2018 18:00:04 7fba7b4] MakeFasta OUT_HEAD=/gscratch/srlab/sr320/analyses/0305b/duck4-p10k \ DIR=/gscratch/scrubbed/sr320/0220/Geoduck/outs/assembly/a.base/gang/ \ micro/final FLAVOR=pseudohap MINSIZE=10000 ABBREV=True -------------------------------------------------------------------------------- version=1.9 style=3 Mon Mar 05 16:58:09 2018: loading assembly files Mon Mar 05 16:59:21 2018: cell reinsertion Mon Mar 05 17:00:43 2018: building lines-of-lines Mon Mar 05 17:00:44 2018: forming lines of lines Mon Mar 05 17:00:50 2018: found 1054223 lines, and 1043853 lines of lines Mon Mar 05 17:00:53 2018: writing the FASTA portion of output to /gscratch/srlab/sr320/analyses/0305b/duck4-p10k.fasta writing 100 dots in 10 groups of 10: .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... writing gzipped object Mon Mar 05 17:11:55 2018: graph info final graph has 13895642 edges reinserted cells start at edge 5080242 33 cell(s) at dead-ends completed conversion in 13.8 minutes