id: Query
26133: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[peptide peak areas with protein associations]
WHERE [peptide sequence] IN
				(SELECT [peptide sequence]
					FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[peptide peak areas with protein associations]
					GROUP BY [peptide sequence]
					HAVING COUNT (*) <2)

24384: SELECT seqname,
	Rel_CpG_pos,
	methratio,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
WHERE aspect = 'P'

250162: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgotophat_cover_cds_split_b]
WHERE "column10" > 20

250213: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gill_percentmeth_gene.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gil_cov_cds_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gill_percentmeth_gene.txt].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gil_cov_cds_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt].id

250352: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'cpg' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [bigill_methratio_v9_a.txt] yel
WHERE context LIKE '__cg_'

20101: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

250287: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'cpg' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_methratio_gene_genomic_f.txt] bg
WHERE context LIKE '__cg_'

250299: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_past_blastx_uniprot.sql.tababcd1]

250344: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_robertslab_ge_f3 trimmed rna-seq.txt]oshv
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod cgigas gene descriptions (swiss-prot)]des ON oshv.id = des.cgi_id

19911: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP].Column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1

50740: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_DML_dev_wb_b.txt]dev
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON dev.Column13=sp.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]slim ON dev.Column13=slim.CGI_ID

254721: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d57b56c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d58babf]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5b3d0b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5e86dc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d51ec9e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d54f115]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5b21a2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5eed6b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d59b725]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5a9a9a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d501006]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d57baeb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d5f2db5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d50f735]

30044: SELECT *
FROM [16cb3c1f300d170e608871ac9acbb828bdfcc6c157b5d014cf7ef4a14dce7d27].[Oly_Blast_uniprot_swissprot.txt]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]des ON blast.Column3 = des.SPID

20136: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gill_percentMeth_gene.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gill_percentMeth_gene.txt].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt].ID

254728: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_br_cglarv_day5.txtdb1a3]

25851: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON d.SPID = GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID = slim.GO_id

250787: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_0004-datas4.txt]

42496: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNA_genetable_clc]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON clc.["Name"]=sp.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON sp.SPID=up.Entry

20033: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID

23717: SELECT Column1, Column3, LENGTH, (Column3 / LENGTH),Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

22525: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] cgsp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ass ON cgsp.SPID = ass.ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim] slim ON ass."GO ID" = slim.GO_id

250860: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_rnaseq_unmapped_nt_blastout_taxa2]

28849: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE minRPKM > 0
		AND NumEx > 5

28850: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE minRPKM > 0
		AND NumEx > 4

25572: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [clean_BiGill_methratio_v9_A]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5

250902: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_0007-datas7.txt]

250928: SELECT column1 AS column1,
	column2 AS column2,
	'intron' AS column3,
	column4 AS column4,
	column5 AS column5,
	'.' AS column6,
	column7 AS column7,
	column8 AS column8,
	column9 AS column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_v9_intron.gff]

28553: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5) ALIAS

22566: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%myostatin%'

250986: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module4_blast.csv]

25242: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID",
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value",
	ex."P-value",
	clc."Experiment - Fold Change (original values)",
	ex."Fold Change (original values)",
	clc."400 - Means",
	clc."1000 - Means"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

30085: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08_uniprot_blastx_out] blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID

251016: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_0009-datas9.txt]

22564: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%prosta%'

42495: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNA_genetable_clc]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON clc.["Name"]=sp.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON sp.SPID=up.Entry

251066: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim]

22567: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%gdf%'

22528: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] cgsp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers] ass ON cgsp.SPID = ass.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim] slim ON ass."GOID" = slim.GO_id

50595: SELECT *,
	([M1ratio]+[T1D5ratio]+[T1D5ratio])/3 AS mean1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

251118: SELECT DISTINCT id,
	spid1,
	goid,
	term,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cgigas larvae rna-seq oshv ur10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim_distinct]ds ON ur.id = ds.cgi_id

251132: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 module 2 joining tables]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[go_to_goslim] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 module 2 joining tables].[go id]=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[go_to_goslim].go_id

22562: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE term LIKE '%immune%'

25848: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON d.SPID = GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID = slim.GO_id

28140: SELECT p.Column1 AS Scaffold,
	p.Column9 AS GeneID,
	p.Column10 AS CGcount,
	m.Column10 AS mCGcount
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

251212: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t1d3]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

251234: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mcpg_5x50_closest_mgosnp]

26288: SELECT Column1 AS Column1,
	Column2 AS Column2,
	'intron' AS Column3,
	Column4 AS Column4,
	Column5 AS Column5,
	'.' AS Column6,
	Column7 AS Column7,
	Column8 AS Column8,
	Column9 AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Cgigas_v9_intron.gff]

22559: SELECT Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE GOSlim_bin LIKE '%stress%'

251262: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_lft_blackabalone_v3_nt_blastout_taxa3]

50647: SELECT *,
	([M1ratio]+[T1D5ratio]+[T1D5ratio])/3 AS mean1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

251279: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t1d5]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

251376: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mcpg_5x50_closest_mgosnp]
WHERE column17 < 1

23806: SELECT Column1,
	Column3,
	Column5,
	LENGTH
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

27420: SELECT DISTINCT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[NSAF based on avg SpC with SPIDs]
LEFT JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt] ON [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[NSAF based on avg SpC with SPIDs].SPID=[51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt].A0A000

251479: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_lft_clc_count644d5]

28893: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["RPKM"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Chromosome"] LIKE 'scaffold44006'

28894: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["RPKM"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Chromosome"] LIKE 'scaffold1261'

22558: SELECT Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE GOSlim_bin LIKE '%stress%'

54883: SELECT *,
	([M1ratio]-[M3ratio])/2 AS diff
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE (([M1ratio]-[M3ratio])/2) > abs(.2)

28892: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["RPKM"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Chromosome"] LIKE 'scaffold44006'

28890: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["RPKM"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Chromosome"] LIKE 'scaffold1261'

251626: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sp.txt]

54884: SELECT *,
	([M1ratio]-[M3ratio])/2 AS diff
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE (([M1ratio]-[M3ratio])/2) > (.2)

254746: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sp_qpxv017_tblastn.txt]

251643: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_gene_intersect_dml_dev_wb_b.txtc231e]

23812: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt] mr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_gene_length.txt] lg ON mr.Column1 = lg.gID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] slim ON lg.gID = slim."CGI_ID"

19662: SELECT ID,
	SUM(mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]
GROUP BY ID

29736: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

25231: SELECT clc."Feature ID",
	clc."Experiment - Fold Change (original values)"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

19912: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mRNA_intersect_mCpGovSNP with gene names]
WHERE Column10 > 1

29041: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

27419: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[NSAF based on avg SpC with SPIDs]
LEFT JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt] ON [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[NSAF based on avg SpC with SPIDs].SPID=[51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt].A0A000

47052: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio < 0.5
		AND T3D3ratio < 0.5
		AND T3D5ratio < 0.5

48301: SELECT *
FROM [e0e25eb95946f0942c07f549905ba287649aaac7b4e59e0f55d10d58bd5321f3].[mRNA taxid6580 joined_uniprot_sprot2]
WHERE aspect LIKE 'P'

28978: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

30101: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchblast_out]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON unp.SPID = GO.SPID

50572: SELECT *,
	[M1ratio]+[T1D3ratio]+[T1D5ratio]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

41177: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vM3 <> ' '
		AND M1vT1D3 = ' '

29753: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

29404: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE '%MP-activated%'

51602: SELECT Contig,
	HK_CF2,
	HK_CF35,
	HK_CF70,
	V_CF26,
	V_CF34,
	V_CF71,
	[Protein names]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_sig_normalized_exp]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_clc_wID_info]des ON sig.contig=des.Column1

20860: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt]
LEFT JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt].Column3=[51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt].A0A000

41147: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
			WHERE M1_meth > 0.5
					AND M3_meth > 0.5
					AND T1D3_meth > 0.5
					AND T1D5_meth > 0.5
					AND T3D3_meth > 0.5
					AND T3D5_meth > 0.5) ALIAS

29741: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

26902: SELECT id,
	foldchange,
	pval,
	de.Column3 AS SPID,
	evalue,
	Column13 AS GeneDes
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

28878: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGillExp_withMeth]me
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description]id ON me.Gene = id.Column1
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]lo ON me.Gene = lo.["Gene name"]

62411: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV]
WHERE ID LIKE 'CGI_10003983'

251915: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt]

23715: SELECT Column1, (Column3 / LENGTH)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

24382: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT(1))/(mRNA.column5 - mRNA.column4)*100 AS Rel_CpG_pos,
	score AS methratio,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

51151: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON blast.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id

24606: SELECT chr AS seqname,
	pos - 1 AS
START, pos + 1 AS [end],
	'CG' AS feature,
	ratio AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt] yel
WHERE context LIKE '__CG_'

19686: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_NOmCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_NOmCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_NOmCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_NOmCpG].ID

251970: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt]
LEFT JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[spid_gonumber.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt].column3=[51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[spid_gonumber.txt].a0a000

22639: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_scaffold_sequence.txt]
WHERE Column1 = 'scaffold500'

27065: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	((cast([Column10]AS float)/(cast([Column12]AS float)))) AS feat_bp,
	Column9 AS Gene
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

252050: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular]

24604: SELECT chr AS seqname,
	pos AS
START, pos + 1 AS [end],
	'CpG' AS feature,
	ratio AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt] yel
WHERE context LIKE '__CG_'

25686: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]oshv
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]des ON oshv.ID = des.CGI_ID
WHERE UniqueReads >=10

24605: SELECT chr AS seqname,
	pos AS
START, pos + 1 AS [end],
	'CG' AS feature,
	ratio AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt] yel
WHERE context LIKE '__CG_'

252119: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_pro_island1u_intersect_mcpg.txt]

25252: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CLCvExcel_RuphiRNAseq]
WHERE "GO enrichment" LIKE $

24403: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS
START, CASE
											WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
											ELSE mRNA_end - Column4 + 1
							END AS [end],
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

19697: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100

42526: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est
WHERE Column5 = 'FQ662477'

41189: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '
		AND M1vT1D5 = ''

24087: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-6)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

252279: SELECT *
FROM [materialized_snapshot of bigo_larvae_joineddata]

252321: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oabs_est_s3.txt]

25334: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE 'man'

29043: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T1D3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29757: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__C__'

25731: SELECT DISTINCT ID,
	SPID1,
	GOID,
	term,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

252413: SELECT *
FROM [materialized_snapshot of fish546 join]

23720: SELECT Column1, Column3, LENGTH, (round(Column3 / LENGTH,0)),Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

26903: SELECT id,
	foldchange,
	pval,
	de.Column3 AS SPID,
	evalue,
	Column13 AS NCBI_nt_Des
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

252495: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_prom_subgene_cgcount.txt]

252493: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_mcpgovsnp]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_mcpgovsnp].column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description].column1

50831: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]dml
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_s2_sig6sig9_join]s2 ON dml.gene_ID=s2.Column2

50622: SELECT *,
	abs(mean1 - mean3)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) <= 0.3

29039: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D5]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

51601: SELECT Contig,
	[Protein names]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_sig_normalized_exp]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_clc_wID_info]des ON sig.contig=des.Column1

59727: SELECT CGI_ID,
	log2FoldChange,
	SPID,
	Description,
	GOID,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]GO ON de.baseMean=GO.CGI_ID
WHERE aspect = 'P'

27061: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end], 'BiGillExonExp' AS Feature, ((cast([Column10]AS float)/(cast([Column12]AS float))))
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

252618: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_gpl11353_array.txt]

252627: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_prom_subgene_permeth.txt]

252643: SELECT id,
	avg(mcpgcount),
	min(mcpgcount),
	max(mcpgcount),
	sum(mcpgcount),
	count(mcpgcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_cds_int_mcpg_2]
GROUP BY id

252675: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_supp data skyline output.csv]

252814: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d37802e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d30c672]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3235a7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d38384b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3ac2e5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d339908]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3358f0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d35577b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3a0c86]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3ff7c3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3eee75]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d305c1b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d37247b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3c8b21]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d31b03c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d34b901]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3d2080]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d36f13f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d366fbe]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d33f9c6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3a36df]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d3cd755]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d344d7a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d30bf42]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d37212f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d36bbc5]

252816: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt01824]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt97772]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4e6f1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txta1e62]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfea12]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt898b4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt2dd16]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt27b01]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8721f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt195e6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0ca14]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4f3d1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt71adc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt2ef1a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte6fb4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt06f14]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf062d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf03f7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt913bf]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt6fdf9]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt6285a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4efa5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtc5b1f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt5344f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7830c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0acfc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8189c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8db0a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte0374]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0f84e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfd320]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtd1c12]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf475b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf385e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7a134]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8a862]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txta6e9e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtcd87e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8ea39]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte32a2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfc3d1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt94758]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt21aa9]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8ee3d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt61b2a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt26329]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtd164e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt64369]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7bf0d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt604be]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtcba8b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0b9c7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf52e0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtc52d5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7dfca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txta89a0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt18205]
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SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt8eefd]
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SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt304b1]
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SELECT *
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SELECT *
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SELECT *
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SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4c006]
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SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte488b]
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SELECT *
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SELECT *
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FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt6f867]
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SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtd313f]
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SELECT *
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SELECT *
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SELECT *
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UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt6e765]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtcef94]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt83575]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4d439]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt6d4dd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt5bb77]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7a1bc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt48803]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt7e504]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt78b43]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt26db8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt81e90]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtc029c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfe31d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte0842]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtd3293]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt11bdc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt31167]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf0ba1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt769ec]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt2f781]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtc3967]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtb80e7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt226b7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4b12f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt295ca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt444f9]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt703bb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt34cd0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4ce11]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt93a69]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtdcf44]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt11508]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtac762]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt750f1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt9800b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt288db]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt10295]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt92bf0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf5ba6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt2ce70]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt49016]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt25efc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtb6948]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt652f3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0bfa5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt23813]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt89993]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt39d0b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4a21c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt9b3ff]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt66253]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtaac35]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt005d2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt91ae8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf3b1a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt5e419]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt69832]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt9c8c7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf5024]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt74d52]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0b3cf]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtf8339]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtffe05]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt46e92]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt76c09]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfd089]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txted8b2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt761ab]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txte2d4a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfd935]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtcc96e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtcaa2c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtca84c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0d1d9]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtdf500]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt07e97]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt957a4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfa24d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt251fa]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtbdae7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtfe576]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt57a81]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtc68df]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt542c8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt246b2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtb3f97]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt4f6ab]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt09a41]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt0ccc5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtbe5d2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt43362]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txtb30d0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt781b2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt66d65]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt63e59]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_v9_a.txt713be]

252818: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_m327896]

252849: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ruphi_rnaseq_supp.csv]

252866: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_pro_island1u_intersect_mcpg_slm.csv]

59628: SELECT SPID,
	basemean AS DiffEx_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

252925: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gene_spid_evalue_go_bigfile.txt]

252940: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_mrna_int_mcpg_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cds_int_mcpg] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_mrna_int_mcpg_2].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cds_int_mcpg].id

30046: SELECT *
FROM [16cb3c1f300d170e608871ac9acbb828bdfcc6c157b5d014cf7ef4a14dce7d27].[Oly_Blast_uniprot_swissprot.txt]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID

59729: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-GOdesc]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-HS-count.txt]cnt ON de.CGI_ID=cnt.[Feature ID]
WHERE GOSlim_bin LIKE '%stress%'

252977: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_est_ncbi_040414_cl49a49]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_est_ncbi_040414_clf0661]

28156: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGo_pro_island1u_intersect_mCpG_slm.csv]pr_is
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_genes]exp ON pr_is.Column1 = exp.["Feature ID"]

253005: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mcpg data table]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[non_mcpg data table] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mcpg data table].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[non_mcpg data table].id

253011: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ets_oatable_s3.txt]

22524: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] cgsp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ass ON cgsp.SPID = ass.ID

24391: SELECT COUNT (*)
FROM
		(SELECT DISTINCT seqname,
				Rel_CpG_pos,
				methratio,
				GOSlim_bin
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
			WHERE aspect = 'P') foo

253031: SELECT clc."feature id" AS clcid,
	ex."feature id" AS suppid,
	ex."target description",
	ex."go enrichment",
	ex."go biological process",
	clc."baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - p-value" AS clcp,
	ex."p-value" AS suppp,
	clc."a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3 - fold change (original values)" AS clcfold,
	ex."fold change (original values)" AS suppfold,
	clc."400 - means" AS clc400,
	ex.rpkm1 AS supprpkm1,
	clc."1000 - means" AS clc1000,
	ex.rpkm AS supprpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_clc_ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ruphi_rnaseq_supp.csv]ex ON clc.[feature id] = ex.[feature id]

24354: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] des ON gff.seqname = des.CGI_ID

253061: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_m177865]

29740: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CT_'

29743: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CT_'

253077: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_rna-seq_dh23ee3e]

253108: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigorna_genetable_clc3a1a4]

253117: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_v9_gene--id7a73b]

41185: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '
		AND M1vT1D5 = ''

253196: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_rna-seq_dh3ac903]

27045: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12)*10 AS Cov_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

24730: SELECT Chromosome,
	"Chromosome region start" - 1 AS
START, "Chromosome region end" AS [end],
	'gene' AS feature,
	RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]

253234: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gene_spid_evalue_description.txt]

28971: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	C_count AS C_count,
	C_count/CT_count AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_M3methylkit_s1]

253311: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_t1d5.txtaabf4]

42529: SELECT ProbeName,
	GB_ACC,
	Description,
	Column7
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

253327: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_est_nuc_ncbi_040414_cl3804b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_est_nuc_ncbi_040414_cl8dc17]

253347: SELECT cgi_id,
	term,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim]
WHERE aspect = 'p'

253352: SELECT chr AS seqname,
	pos - 1 AS
START, pos + 1 AS [end],

253371: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__co_m1_masterb52c4]

25847: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON d.SPID = GO.SPID

253504: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_piura_v1_uniprot_sprot_4932430d42a37a598f74cb7b0c7afff72e2e67e41307ada2cfb332c063919f0c.tab]

50824: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]dml
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join ]s19 ON dml.gene_ID=s19.Column2

254775: SELECT *
FROM [materialized_snapshot of stress query]

24629: SELECT *,
	Chromosome,
	"Chromosome region start",
	"Chromosome region end",
	"Feature ID",
	"Expression Values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]

253603: SELECT *
FROM [table_sockeye solid assembly blast output (swiss-prot)]

22865: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_RepeatProteinMask_v9]
WHERE METHOD = 'WUBlastX'

253613: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sig6_blastn_sig9.txt]

253624: SELECT *
FROM [table_seafan swissprot top blast hit]

253641: SELECT DISTINCT a0a000 AS spid,
	"go:0003824" AS goid
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[spid_gonumber.txt]

253680: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_t1d3c1694]

19663: SELECT ID,
	avg(mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]
GROUP BY ID

253688: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08_uniprot_blastx_outc2d2c]

19887: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column10" > 10

253693: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_rnaseq_normalized_expression.txt]

253704: SELECT *
FROM [table_uniprot_sprot_title]

42525: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est
WHERE Column5='CU995582'

29421: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV]
WHERE ID LIKE 'CGI_10003983'

253798: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_clc_wid.csv]

47085: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	m1ratio + T1D3ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio < 0.5
		AND T3D3ratio < 0.5
		AND T3D5ratio < 0.5

27915: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_pro_island1u_intersect_mCpG_mod.txt]pls
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[ExpressedGeneGil.txt]z ON pls.Column9 = z.ID

25842: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON d.SPID = GO.SPID

253880: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_roberts_sigenae6_transcriptome_1.tab]

54955: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON b.ID LIKE sp.SPID

69363: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column3=up.Entry

54954: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON b.ID LIKE sp.SPID

253967: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sq_cglarv_lineage_3.txt85219]

253973: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod cgigas gene descriptions (swiss-prot)] cgsp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[spid and go numbers] ass ON cgsp.spid = ass.spid
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[go_to_goslim] slim ON ass."goid" = slim.go_id

51713: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_uniprot_sprot_sq.tab]phel
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]des ON phel.Column3=des.Entry

254035: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchblast_out.tab695f1]

254097: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m14d3e7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1b2d23]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m18382d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1e86b6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1fbfa0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m185d9e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1f9e90]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1827d7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m192bcb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1cd0dc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m120a9f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1283c7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m199e68]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1b362a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1f1820]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m195138]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1ec325]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m129005]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1b1abc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1368f8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m180b48]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m1e23b4]

39439: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange > 2

254113: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mgotophat_coverage_cds.txt]

254118: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigorna_array_v68c8d6]

20141: SELECT GENEID,
	Gil
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Table S14.csv]

254136: SELECT chromosome,
	"chromosome region start" - 1 AS
START, "chromosome region end",
	'exon' AS feature,
	"expression values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mgo_rnaseq_transcript]

254150: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchblast2_out.tab9bd38]

29638: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[DMRmgavery_mRNA_annotated]dmr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_CCD_domain_concise_Superfamily_def]sf ON dmr.gene_CGI = sf.CGI_ID

30113: SELECT COUNT (*)
FROM
		(SELECT GOSlim_bin
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[PieTest])pie

254205: SELECT column1,
	column2,
	column3,
	column4,
	column5,
	column6,
	column7,
	column8,
	CASE
					WHEN charindex(';', column9) = 0 THEN column9
					ELSE substring(column9, 8, charindex(';', column9)-8)
	END AS column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_cds.txt]

254220: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_br_cglarv_sperm.txt12a0f]

254265: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_blastx_sprot.sql]

254269: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_methratio_cgm1cc2c3]

39446: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange < 2

23824: SELECT Column1 AS Gene_ID,
	Column3 AS POSITION,
	Column5 AS Meth_ratio,
	LENGTH,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]
WHERE LENGTH > 500

254321: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_table s14.csv]

41175: SELECT loci_id,
	M1vM3,
	M1vT1D3,
	M1vT1D5,
	M3vT3D3,
	M3vT3D5,
	T1D3vT1D5,
	T1D3vT3D3,
	T1D5vT3D5
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[DMRs_AllLoci_PairwiseComparisons]

24160: SELECT cds.Column1,
	cds.Column2,
	cds.Column3,
	cds.Column4 - mRNA.Column4 +1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

254436: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchblastx_out2cb89]

29244: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_joineddata_sums.csv]
WHERE CountingCs = 6

28572: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5
					AND context LIKE '__CG_'
					AND ratio = '0.000') ALIAS

28704: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
			WHERE avgRPKM > 10
					AND NumEx >5
					AND NumEx <20)aliea

254514: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[joined pnitzschia files]

254516: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_nonred_id split]id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_m1_hack]m1 ON id.[chr]=m1.[chr]
AND id.[start]=m1.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_t1d3_hack]t1d3 ON id.[chr]=t1d3.[chr]
AND id.[start]=t1d3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_t1d5_hack]t1d5 ON id.[chr]=t1d5.[chr]
AND id.[start]=t1d5.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_m3_hack]m3 ON id.[chr]=m3.[chr]
AND id.[start]=m3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_t3d3_hack]t3d3 ON id.[chr]=t3d3.[chr]
AND id.[start]=t3d3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigo_lar_t3d5_hack]t3d5 ON id.[chr]=t3d5.[chr]
AND id.[start]=t3d5.[start]

23710: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

26768: SELECT ["Chromosome"] AS seqname,
	["Chromosome region start"] AS
START, ["Chromosome region start"] AS [end],
	'tr_expression' AS feature,
	["RPKM"] AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGoRNAseq_exon_exp_1.txt]

24085: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-18)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

26769: SELECT ["Chromosome"] AS seqname,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'tr_expression' AS feature,
	["RPKM"] AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGoRNAseq_exon_exp_1.txt]

24086: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-12)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24088: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-7)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24089: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-8)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24074: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 4, CHARINDEX(';', Column9)-1)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24080: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-4)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

50623: SELECT *,
	abs(mean1 - mean3) AS meandiff
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) <= 0.3

50624: SELECT *,
	abs(mean1 - mean3) AS meandiff
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) >= 0.3

20069: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]

28697: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM,
	min(cds_rpkm) AS minRPKM,
	avg(cds_rpkm) AS avgRPKM,
	var(cds_rpkm) AS varRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

24357: SELECT seqname,
START, score,
	SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] des ON gff.seqname = des.CGI_ID

50739: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_DML_dev_wb_b.txt]dev
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON dev.Column13=sp.CGI_ID

28977: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	freqC AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_M3mehthykit_step2]

256166: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_gene_intersect_te_c2g.txt60d7d]

69503: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join]d
RIGHT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]s ON d.Column1=s.Column1

20015: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Ratio mCDS/mIntron" > 2

25841: SELECT Column1 AS ContigID,
	Column5 AS SPID,
	Column17 AS evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_lft_BlackAbalone_v3_swissprot_blastout_d]

254829: SELECT column1 AS cgi_id,
	column2 AS spid,
	column3 AS evalue,
	column5 AS description
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[tjgr_gene_spid_evalue_description.txt]

254836: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ey_mixmethratio_3.txt]

42527: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

254841: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_pro_island1u_intersect_mcpg_mod.txt]

21889: SELECT Column1 AS ID
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[TJGR_Gene_SPID_evalue_Description.txt]

254847: SELECT column1 AS gene_id,
	column3 AS POSITION,
	column5 AS meth_ratio,
	LENGTH,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[making pictures]
WHERE LENGTH > 500

27673: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = 'Vitello%'

254859: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oa_enrich445c9]

254860: SELECT *
FROM [table_abalonecc_cedenovo]

28706: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM < 10

69504: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]s ON d.Column1=s.Column1

29044: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	C_count AS C_count,
	C_count/CT_count AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_methylkit_T1D3_step1]

254887: SELECT DISTINCT column1 AS query,
	column3 AS spid,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchjoin_slim]
WHERE aspect = 'p'

28885: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

254938: SELECT ["gene name"] AS gene,
	["transcripts annotated"] AS exons,
	["expression values"] AS cds_rpkm,
	["relative rpkm"] AS cds_relrpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_rnaseq_exon]

24240: SELECT cds.*,
	mRNA.Column4 AS mRNA_start,
	mRNA.Column5 AS mRNA_end
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Snapshot of CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

42520: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

254970: SELECT *
FROM [table_rnaseq_abcecc_denovo]

254969: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oa_enrich2e960c]

26036: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) = 2

254989: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_ye_control_22smcg3xd4a77]

28136: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

28724: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM > 200

28247: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON g.seqname = sp.CGI_ID

255108: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_var.csv]

255105: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_ye_mix_22smcg3x9fbdf]

30107: SELECT DISTINCT Column1 AS query,
	Column3 AS SPID,
	Column13 AS evalue,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchjoin_slim]

30110: SELECT DISTINCT Column1 AS query,
	Column3 AS SPID,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchjoin_slim]
WHERE aspect = 'P'

255147: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_merc_id_cpg228df]

20016: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Ratio mCDS/mIntron" > 2

27047: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12) AS feat_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

255164: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dmr2] dmr2
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[spid and go numbers] ass ON dmr2.column4 = ass.spid
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[go_to_goslim] slim ON ass."goid" = slim.go_id

29413: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE 'CGI_10000033'

255249: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__rebuilt.gtf.geneidend68656]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__rebuilt.gtf.geneidend15669]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__rebuilt.gtf.geneidend73f3e]

255226: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__uniprot1f5e4]

255254: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_proteome_blast_mouse7914d]

41142: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth >0.5

20127: SELECT Column9,
	sum(Column10)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_CDS_intersect_gillMBDmCpG]
GROUP BY Column9

25656: SELECT ["Feature ID"] AS ID,
	["Unique gene reads"] AS UniqueReads,
	["Total gene reads"] AS TotalReads,
	["RPKM"] AS RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]

255301: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_zhang_gil_gene_rna-seq03bc8]

20049: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gene_SPID_evalue_Description.txt]

49413: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_1000000'

255338: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__~/desktop/piura_wd/uniprotbf759]

25013: SELECT *,
	1 AS Column1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Mgo_gene_RNA-seq_IGV]

20058: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA gene]

28606: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5])m3

20014: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Ratio mCDS/mIntron" > 2

22545: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE aspect='P'

255454: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__!dateuniprot3fadd]

28583: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count > 20
					AND context LIKE '__CG_')m3

28566: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5
					AND context LIKE '__CG_') ALIAS

255474: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_galaxy4-_o_fasta-to-tabular_on_data_2_c_.txt]

255491: SELECT genedesc.*,
	coalesce(1.0*methcgcnt/allcgcnt,0) AS methratio
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[methylated_cg_gene_count] methcg
RIGHT OUTER JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[all_cg_gene_count] allcg ON methcg.groupid = allcg.groupid
JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[tjgr_gene_spid_evalue_description.txt] genedesc ON genedesc.column1 = substring(allcg.groupid, charindex('cgi', allcg.groupid), len(allcg.groupid))

255526: SELECT *
FROM [materialized_snapshot of cds gff]

42556: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_GPL11353_v6ref]
WHERE RPKM > 200

24987: SELECT count(CAS001MethStat)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[primer 1 methylation status]
WHERE CAS001MethStat LIKE 'U'

27678: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = '%estro%'

28577: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_F]
			WHERE CT_count >=5
					AND context LIKE '__CG_')al

255587: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt144b4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt29f1f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtccfa6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt0ed00]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt26fbd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt28f74]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc1f35]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtb467b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt9d989]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txteb1b3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt48583]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtb81ba]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt7a504]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc4f03]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt36e0d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt3e5ab]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt6f51b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt0ef37]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc42b0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt77857]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtacf50]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt81efd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txteb3ee]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt2f1a5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtcb197]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt863ec]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtf328d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txta3624]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt90520]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt8c56f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt03577]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt4513b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt7fbaf]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc2802]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc7d30]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt96651]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtfa856]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtdc2be]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtda0b1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtc1fc0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt87829]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtbaf70]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt575cc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtdf9ca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txtf4393]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt085d0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt74b58]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_sequence.txt8c669]

41150: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > 0.5
		AND M3_meth < 0.5
		AND T1D3_meth > 0.5
		AND T1D5_meth > 0.5
		AND T3D3_meth < 0.5
		AND T3D5_meth < 0.5

28862: SELECT Gene,
	max(exons) AS Exon

255668: SELECT cgi_id,
	goslim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cgigas-deglist-sql]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_goslim_distinct]sl ON deg.basemean=sl.cgi_id
WHERE aspect LIKE 'p'

54877: SELECT *,
	([M1ratio]+[M3ratio])/2 AS meanmales
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci

19965: SELECT Protein
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Skyline peptide areas for sql.txt]

255709: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_expressedgenegil.txt]

255710: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_degene_outb98f9]

25339: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '%gigas'
		OR Organism LIKE '%oyst%'

41019: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratch_methratio_out]
WHERE ratio = 'NA'
		AND C_count > 0
		AND eff_CT_count <> 0

27631: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10008720'

255771: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cg_lineage_140de6]

255795: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_blastx_pm_e50.tab]

27617: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10003515'

27621: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10015360'

27434: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10011651'

255893: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_file_s2.txt]

28139: SELECT p.Column1,
	p.Column9 AS Gene,
	p.Column10
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

255934: SELECT loci,
	CAST (m1ratio AS float) AS m1ratio,
	CAST (t1d3ratio AS float) AS t1d3ratio,
	CAST (t1d5ratio AS float) AS t1d5ratio,
	CAST (mean AS float) AS mean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cg_lineage_1]

255968: SELECT loci_id,
	m1vm3,
	m1vt1d3,
	m1vt1d5,
	m3vt3d3,
	m3vt3d5,
	t1d3vt1d5,
	t1d3vt3d3,
	t1d5vt3d5
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[dmrs_allloci_pairwisecomparisons]

256015: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_file_s3.txt]

41153: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > .5
		AND M3_meth > .5
		AND T1D3_meth < 0.5
		AND T1D5_meth < 0.5
		AND T3D3_meth < 0.5
		AND T3D5_meth < 0.5

19688: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mCpG data table]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[NON_mCpG data table] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mCpG data table].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[NON_mCpG data table].ID

256087: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigolarvae_dmr2819bc]

256098: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_supplemental table1 .txt]

257275: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_gillmbdmcpg]

256135: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_file_s3exp.txt]

29400: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE 'AMP-activated'

28745: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 5
		AND COUNT < 50
		AND SUM > 100

50511: SELECT *,
	T1D5ratio + M3ratio AS NEW
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrT1D5.txt]t1d5
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrM3.txt]m3 ON t1d5.T1D5loci=m3.M3loci

45010: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3M1_M3_CGfeature]
WHERE M1ratio > 0.5

19651: SELECT COUNT (mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]

22635: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences] pro
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim ON pro.CGI_ID = cgslim.CGI_ID
WHERE ProteinSeq LIKE '%Claire%'

27891: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]

256363: SELECT *
FROM [materialized_snapshot of mrna taxid6580 joined_uniprot_sprot2]

256369: SELECT cgi_id,
	log2foldchange,
	spid,
	description,
	goid,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cgigas-deglist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim_distinct]GO ON de.basemean=GO.cgi_id
WHERE aspect = 'p'

256398: SELECT [chr],
	cast([pos] AS integer) AS [pos],
	[strand],
	[context],
	cast([ratio] AS float) AS [ratio],
	cast([eff_ct_count] AS integer) AS [eff_ct_count],
	cast([c_count] AS integer) AS [c_count],
	cast([ct_count] AS integer) AS [ct_count],
	cast([rev_g_count] AS integer) AS [rev_g_count],
	cast([ci_lower] AS float) AS [ci_lower],
	cast([ci_upper] AS float) AS [ci_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_methratio_v9_a.txt]
WHERE [ratio] <> 'na'

256414: SELECT cgi_id,
	len(sequence) AS cds_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_gene_fasta]

256420: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_2800m_enrich2d2062]

25021: SELECT *, ('EMP'+right('00'+CONVERT([varchar](5),[start]),(5)))
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Mgo_gene_RNA-seq_IGV]

28700: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM >0
		AND NumEx >5
		AND NumEx <20

27063: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	((cast([Column10]AS float)/(cast([Column12]AS float))))*1000
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

256475: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas-hs-count.txt]

256554: SELECT chromosome,
	"chromosome region start" - 1 AS
START, "chromosome region end" AS [end],
	'gene' AS feature,
	rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_zhang_gil_gene_rna-seq]

20066: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mRNA_intersect_mCpGovSNP with gene names]

256569: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fafa4ec]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa5ebde]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa89a75]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.faef77b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa226a6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.faf2dbf]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fadd967]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa8dad6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa64c38]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fab08d8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa4482a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa4da3a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa8e2f6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa78ea1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa7f8f5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa803f6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.faa7c07]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa43763]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fae7dee]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fae97d0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fab8d28]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_genomic_gene_fs.fa4771b]

20106: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	stdev(column14),
	min(column14),
	max(Column14),
	avg(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

20118: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	avg(Column14),
	stdev(column14),
	min(column14),
	max(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

256615: SELECT chromosome,
	"chromosome region start" - 1 AS
START, "chromosome region end" AS [end],
	'gene' AS feature,
	rpkm AS mgo_rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_zhang_mgo_gene_rna-seq]

20104: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	varp(column14),
	min(column14),
	max(Column14),
	avg(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

256674: SELECT id,
	"ratio mcds/mintron",
	"percent mcpg (mrna)",
	"percent mcpg (cds)",
	"percent mcpg (intron)",
	swissprot,
	"sum mrna",
	mgo
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_aggco oyster bisulfite mrna and cds.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_etal_supptable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_aggco oyster bisulfite mrna and cds.tab].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_etal_supptable14].geneid
WHERE mgo > 1
		AND "sum mrna" > 50

28609: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio >= 0.25
					AND ratio < 0.5)m3

23841: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length]
WHERE LENGTH > 1000

28560: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
			WHERE CT_count < 5) ALIAS

256765: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_deseq2_sig_results_c.txt]

256801: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill_exon_stdev_avg]
WHERE exon

24242: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd

27685: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE 'Super%'

50984: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE '%cell%'

50971: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE 'immune'

27674: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = 'Vitello_'

29644: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'CGI_10027416'

256924: SELECT ["chromosome"] AS seqid,
	["chromosome region start"] AS
START, ["chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["rpkm"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_rnaseq_exon]

44976: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
WHERE M1ratio > 0
		AND M3ratio > 0

256932: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qpx_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_uniquereads_simple.txt]

28593: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
WHERE ratio =0.333

256959: SELECT *
FROM [materialized_snapshot_mrna taxid6580 joined_uniprot_sprot2]

62407: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'CGI_10000408%'

256992: SELECT DISTINCT cgi_id,
	goslim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim_distinct]

256529: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_2800m_enrich33f9ec]

257019: SELECT *
FROM [e0e25eb95946f0942c07f549905ba287649aaac7b4e59e0f55d10d58bd5321f3].[mrna taxid6580 joined_uniprot_sprot2]
WHERE aspect = 'p'

33777: SELECT *
FROM [16cb3c1f300d170e608871ac9acbb828bdfcc6c157b5d014cf7ef4a14dce7d27].[Olympia Oyster Uniprot_swissprot with SPID]
WHERE Status = 'reviewed'

28122: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]oshv
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]des ON oshv.ID = des.CGI_ID

26048: SELECT COUNT (*)
FROM
		(SELECT DISTINCT PeptideSequence
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]) GO

59623: SELECT SPID,
	basemean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

29765: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_genes]
			WHERE ["RPKM"] > 0) bety

20018: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100

18686: SELECT [GO ID]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

257160: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gil_exp_coverage_cds_summary4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0]
WHERE column4 >0

20128: SELECT Column9,
	sum(Column10)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_CDS_intersect_allCpG]
GROUP BY Column9

62405: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'CGI_100004%'

41143: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > 0.5
		AND M3_meth > 0.5

45003: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]
WHERE M3ratio = 'NA'

20160: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 50
		AND CG >10
		AND CDScount >3

27046: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12) AS Cov_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

32208: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE gig1 LIKE 'CGI%'

20126: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_CDS_intersect_gillMBDmCpG]

22560: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE GOSlim_bin LIKE '%stress%'

257391: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_cds_intersect_gillmbdmcpg]

19664: SELECT ID,
	avg(mCpGcount),
	sum(mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]
GROUP BY ID

257452: SELECT column9,
	sum(column10)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_cds_intersect_gillmbdmcpg]
GROUP BY column9

28732: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI*'

30069: SELECT "2800 avg NSAF"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[ETS_oaTable_S3]

50967: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE '%Fermentation%'

30116: SELECT GOSlim_bin,
	COUNT(GOSlim_bin)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[PieTest]
GROUP BY GOSlim_bin

20163: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 50
		AND CG >10
		AND CDScount >3

19714: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "SUM mRNA" > 100
		AND "Ratio mCDS/mIntron" > 3

25016: SELECT *,
	'Emp' + CAST(START AS varchar(16))
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Mgo_gene_RNA-seq_IGV]

257591: SELECT ["feature id"] AS id,
	["unique gene reads"] AS uniquereads,
	["total gene reads"] AS totalreads,
	["rpkm"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_solid0078_20091105_robertslab_ge_f3 trimmed rna-seq.txt]

39437: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE [Gene ontology (GO)] LIKE '%immune%'
		OR [Gene ontology (GO)] LIKE '%glycolysis%'
		AND Status LIKE 'reviewed'

20047: SELECT ID,
	"Ratio mCDS/mIntron",
	CDScount,
	"Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA",
	Mgo
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 1
		AND "Sum mRNA" > 50

28747: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10009854'

257728: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t1d3]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

257750: SELECT column9,
	sum(column10)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_cds_intersect_allcpg]
GROUP BY column9

28783: SELECT len(sequence)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

28602: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio >= .75)m3

257876: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgotophat_cover_cds_split_b]

43648: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_SexSpecific_File_S1]
WHERE [Mean Males] > [Mean Females]

257885: SELECT seqname,
	START AS cpg_pos,
	cast
		(START AS float(1))/(mrna.column5 - mrna.column4)*100 AS rel_cpg_pos,
	score AS methratio,
	term,
	goslim_bin,
	aspect,
	mrna.column5 - mrna.column4 AS mrna_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_methratio_gene_genomic_gff] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim] des ON gff.seqname = des.cgi_id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mrna gff] mrna ON gff.seqname = mrna.column9

20158: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 50
		AND Gil >10
		AND CG >10

257924: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gill_percentmeth_gene.txt]

28688: SELECT ["Gene Name"] AS Gene,
	["Transcripts annotated"] AS exons,
	["Expression values"] AS cds_rpkm,
	["Relative RPKM"] AS cds_relrpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

41018: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratch_methratio_out]
WHERE ratio = 'NA'
		AND C_count > 0

28569: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5) ALIAS

47086: SELECT M1ID,M1ratio,T1D3ratio,T1D5ratio,(m1ratio + T1D3ratio + T1D5ratio)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio < 0.5
		AND T3D3ratio < 0.5
		AND T3D5ratio < 0.5

26900: SELECT *
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

26881: SELECT COUNT (*)
FROM
		(SELECT column13,
				Column14
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]) ns
GROUP BY Column14

28736: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI_10026597'

44990: SELECT *,
	CONCAT (Column1,'_', Column4) AS ChrStart
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CGannot_Ensembl_feat]

20137: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt]

25332: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "date ordered" LIKE '_2013'

47053: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio >= 0.5
		AND T3D3ratio >= 0.5
		AND T3D5ratio >= 0.5

47054: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.8
		AND T1D3ratio >= 0.8
		AND T1D5ratio >= 0.8
		AND M3ratio >= 0.8
		AND T3D3ratio >= 0.8
		AND T3D5ratio >= 0.8

32190: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE [gig1] LIKE '%   '

18650: SELECT SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

20442: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546TJGR_mRNA_int_mCpG_2]

28699: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM >0
		AND NumEx >5

47109: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [stdev],

		(SELECT var(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [var],

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) / ((m1ratio + T1D3ratio + T1D5ratio)/3) AS cv
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0

24402: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, Column4 - mRNA_start + 1 AS newstart,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS nesxstart,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS [end],
	Column5 - mRNA_start + 1 AS newend,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS newsxend,
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

43647: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
WHERE M1coverage > 2

24383: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
WHERE aspect = 'P'

47088: SELECT M1ID,M1ratio,T1D3ratio,T1D5ratio,((m1ratio + T1D3ratio + T1D5ratio)/3)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio < 0.5
		AND T3D3ratio < 0.5
		AND T3D5ratio < 0.5

24401: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, Column4 - mRNA_start + 1 AS newstart,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS nesxstart,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS [end],
	Column5 - mRNA_start + 1 AS newend,
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

47058: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0
		AND T1D3ratio = 0
		AND T1D5ratio = 0
		AND M3ratio > 0
		AND T3D3ratio = 0
		AND T3D5ratio = 0

28591: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
WHERE ratio = 0

24328: SELECT cd.Column1,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

28592: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
WHERE ratio > 0

45006: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]
WHERE M3ratio = 0

22637: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_scaffold_sequence.txt]
WHERE Column1 = 'scaffold29146'

25253: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CLCvExcel_RuphiRNAseq]
WHERE "GO enrichment" LIKE '*'

29243: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_nonred_ID split]id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_M1_hack]M1 ON id.[chr]=M1.[chr]
AND id.[start]=M1.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_T1D3_hack]T1D3 ON id.[chr]=T1D3.[chr]
AND id.[start]=T1D3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_T1D5_hack]T1D5 ON id.[chr]=T1D5.[chr]
AND id.[start]=T1D5.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_M3_hack]M3 ON id.[chr]=M3.[chr]
AND id.[start]=M3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_T3D3_hack]T3D3 ON id.[chr]=T3D3.[chr]
AND id.[start]=T3D3.[start]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_T3D5_hack]T3D5 ON id.[chr]=T3D5.[chr]
AND id.[start]=T3D5.[start]

18658: SELECT ContigID,
	SPID,
	[GO ID],
	term,
	GOSlim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_mod3_slim]

24732: SELECT Chromosome,
	"Chromosome region start" - 1 AS
START, "Chromosome region end" AS [end],
	'gene' AS feature,
	RPKM AS Mgo_RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Mgo_gene_RNA-seq]

59626: SELECT SPID,
	basemean AS DiffEx_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

19919: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column14 = 0

252270: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t3d5]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

29420: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV]
WHERE ID LIKE 'CGI_10025389'

19928: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_GO_bigfile] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_GO_bigfile].Column1
WHERE Column15 < 100

26286: SELECT Column1 AS Column1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Cgigas_v9_intron.gff]

19930: SELECT Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA LESS100]

25245: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means",
	ex.RPKM1 AS SuppRPKM1,
	clc."1000 - Means",
	ex.RPKM AS SuppRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

28689: SELECT min(exons)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

62379: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14]
WHERE GeneID='CGI_10003983'

25571: SELECT [chr],
	CAST([pos] AS INTEGER) AS [pos],
	[strand],
	[context],
	CAST([ratio] AS FLOAT) AS [ratio],
	CAST([eff_CT_count] AS INTEGER) AS [eff_CT_count],
	CAST([C_count] AS INTEGER) AS [C_count],
	CAST([CT_count] AS INTEGER) AS [CT_count],
	CAST([rev_G_count] AS INTEGER) AS [rev_G_count],
	CAST([CI_lower] AS FLOAT) AS [CI_lower],
	CAST([CI_upper] AS FLOAT) AS [CI_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
WHERE [ratio] <> 'NA'

19903: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mCpG_5x50_closest_MgoSNP]
WHERE Column17 < 1

24381: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT(1))/(mRNA.column5 - mRNA.column4)*100 AS Rel_CpG_pos,
	score AS methratio,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

50676: SELECT *,
	sperm.mean_sperm-d3.mean_day3 AS 's-3',
	sperm.mean_sperm-d5.mean_day5 AS 's-5',
	d3.mean_day3-d5.mean_day5 AS '3-5'
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.3
		OR abs(sperm.mean_sperm-d5.mean_day5) > 0.3
		OR abs(d3.mean_day3-d5.mean_day5) > 0.3

39440: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE pval < .05

20552: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[MgoTophat_coverage_CDS_summ_cv]
WHERE CDScount >20

29410: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE 'CGI_10003983'

29415: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE 'CGI_10025389'

24380: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT(1))/(mRNA.column5 - mRNA.column4)*100 AS Rel_CpG_pos,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

48299: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Snapshot of mRNA taxid6580 joined_uniprot_sprot2]

24379: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT(1))/(mRNA.column5 - mRNA.column4)*100 AS Rel_CpG_pos,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length ASC

24373: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT)/(mRNA.column5 - mRNA.column4)*100 AS Rel_CpG_pos,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length ASC

255310: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot_sprot_title] u,
	[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sockeye solid assembly blast output (swiss-prot)] s
WHERE u.q197f8 = s.[sp id]

24371: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT)/(mRNA.column5 - mRNA.column4) AS Rel_CpG_pos,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

24372: SELECT seqname,
	START AS CpG_pos,
	CAST
		(START AS FLOAT)/(mRNA.column5 - mRNA.column4) AS Rel_CpG_pos,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length ASC

19929: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA LESS100]

40976: SELECT *,
	'Column1',
	'Column2'
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_methratio_CgM1]

28656: SELECT COUNT (*)
FROM
		(SELECT DISTINCT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5
					AND ["RPKM"] > 40) ALIAS

28655: SELECT COUNT (*)
FROM
		(SELECT DISTINCT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5
					AND ["RPKM"] > 20) ALIAS

41141: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final]
WHERE [T3D3_meth] = 'NA'

20046: SELECT ID,
	"Ratio mCDS/mIntron",
	"Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA",
	Mgo
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 0
		AND "Sum mRNA" > 50

29204: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T1D3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29203: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

24366: SELECT seqname,
	START AS CpG_pos,
	score AS methratio,
	SPID,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

23814: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt] mr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_gene_length.txt] lg ON mr.Column1 = lg.gID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] slim ON lg.gID = slim."CGI_ID"
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_oyster_gene_exon_number] ex ON lg.gID = ex.CGI_ID

24364: SELECT seqname,
	START AS CpG_pos,
	score,
	SPID,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

29245: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_joineddata_sums.csv]
WHERE CountingCs = 6
		AND SummingCs > 0

24362: SELECT seqname,
START, score,
	SPID,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9
ORDER BY mRNA_length DESC

28807: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) / (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

24361: SELECT seqname,
START, score,
	SPID,
	term,
	GOSlim_bin,
	aspect,
	mRNA.column5 - mRNA.column4 AS mRNA_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON gff.seqname = mRNA.Column9

59299: SELECT DISTINCT Column1,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_uniprot_sprot_sql.tab]p
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]sp ON p.Column3=sp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON p.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect LIKE 'P'

59363: SELECT Column1,
	term,
	GOSlim_bin,
	aspect,
	ProteinName
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_uniprot_sprot_sql.tab]p
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]sp ON p.Column3=sp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON p.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id

20038: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 100

70412: SELECT COUNT (*)
FROM
		(SELECT DISTINCT Column1 AS ContigID,
				GOSlim_bin
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Past_blastx_uniprot.sql.tab]anno
			LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON anno.Column3=GO.SPID
			LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
			WHERE aspect LIKE 'P') ALIAS

18563: SELECT ContigID,
	SPID,
	GENEID,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

18562: SELECT ContigID,
	SPID,
	GENEID,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

28150: SELECT p.Column9 AS GeneID,
	p.Column10 AS CGcount,
	m.Column10 AS mCGcount,
	CASE
					WHEN p.Column10 = '0' THEN m.Column10
					ELSE (m.Column10/p.Column10)
	END AS PerMeth
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

29046: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

30102: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchblast_out]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON unp.SPID = GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON unp.SPID = GO.SPID

18635: SELECT [GO ID]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

50745: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_DML_dev_wb_b.txt]dev
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON dev.Column13=sp.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]slim ON dev.Column13=slim.CGI_ID
WHERE [aspect] = 'P'

30106: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchblast_out]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3 = unp.Entry
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON unp.Entry = GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON slim.GO_id = GO.GOID

18560: SELECT SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

30104: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchblast_out]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3 = unp.Entry
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON unp.Entry = GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON unp.Entry = GO.SPID

24602: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt] yel
WHERE context LIKE '__CG_'

25566: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	cast(ratio AS float) AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

24156: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 4, CHARINDEX(';', Column9)-4)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_mRNA.txt]

24092: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-8)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

22571: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE term LIKE '%methyl%'
		OR term LIKE '%histone%'

22572: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE term LIKE '%methyl%'
		OR term LIKE '%epigen%'

24095: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-8)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF]

24098: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 4, CHARINDEX(';', Column9)-3)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF]

70404: SELECT DISTINCT Column1 AS ContigID,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Past_blastx_uniprot.sql.tab]anno
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON anno.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect LIKE 'P'

19705: SELECT Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS].ID

24607: SELECT chr AS seqname,
	pos - 1 AS
START, pos + 1 AS [end],

22563: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%interleuk%'

22568: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%DMNT%'

22565: SELECT cgslim.CGI_ID,
	Description,
	evalue,
	SPID,
	GOID,
	term,
	GOSlim_bin,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta] cgf ON cgslim.CGI_ID = cgf.CGI_ID
WHERE Description LIKE '%myo%'

51199: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON blast.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect = 'P'

20862: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt]
LEFT JOIN [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mod7_blastout_sp.txt].Column3=[51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt].A0A000

24360: SELECT seqname,
START, score,
	SPID,
	term,
	GOSlim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID

22638: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_scaffold_sequence.txt]
WHERE Column1 = 'scaffold920'

24983: SELECT count(CAS001MethStat)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[primer 1 methylation status]

28188: SELECT id,
	foldChange,
	pval,
	blast.Column3,
	Column11 AS evalue
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAB_DESeq.txt]d
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAbalone_Contigs_v3_BLAST.txt]blast ON d.id=blast.Column1

44978: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
WHERE M1ratio <> ' '

41191: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '
		AND M1vT1D5=NULL

24075: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-1)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24070: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 1, CHARINDEX(';', Column9)-1)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

22746: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[DMR2] dmr2
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers] ass ON dmr2.Column4 = ass.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim] slim ON ass."GOID" = slim.GO_id

59747: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-GOdesc]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-HS-count.txt]cnt ON de.CGI_ID=cnt.[Feature ID]
WHERE GOSlim_bin LIKE 'death'
		AND Description LIKE '%apop%'

22626: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Steven%'

50586: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

50571: SELECT loci,
	CAST (M1ratio AS float) AS M1ratio,
	CAST (T1D3ratio AS float) AS T1D3ratio,
	CAST (T1D5ratio AS float) AS T1D5ratio,
	CAST (mean AS float) AS mean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cg_lineage_1]

25685: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]oshv
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]des ON oshv.ID = des.CGI_ID

50570: SELECT *,
	CAST (M1ratio AS float) AS M1ratio,
	CAST (T1D3ratio AS float) AS T1D3ratio,
	CAST (T1D5ratio AS float) AS T1D5ratio,
	CAST (mean AS float) AS mean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cg_lineage_1]

25730: SELECT DISTINCT ID,
	SPID1,
	GOID,
	term
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

50556: SELECT CAST (M1ratio AS float) AS M1ratio,
	CAST (T1D3ratio AS float) AS T1D3ratio,
	CAST (T1D5ratio AS float) AS T1D5ratio,
	CAST (mean AS float) AS mean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cg_lineage_1]

54887: SELECT *,
	([M1ratio]-[M3ratio]) AS diff
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci

24359: SELECT seqname,
START, score,
	SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] des ON gff.seqname = des.CGI_ID

22634: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences] pro
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] cgslim ON pro.CGI_ID = cgslim.CGI_ID
WHERE ProteinSeq LIKE '%Steven%'

50974: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE '%immune%'

28886: SELECT ["Chromosome"] AS seqid,
	["Chromosome region start"] AS
START, ["Chromosome region end"] AS [end],
	'exon_exp' AS feature,
	["RPKM"] AS rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

50746: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_DML_dev_wb_b.txt]dev
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]slim ON dev.Column13=slim.CGI_ID
WHERE [aspect] = 'P'

25729: SELECT ID,
	SPID1,
	GOID,
	term
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

28123: SELECT DISTINCT ID,
	SPID1,
	GOID,
	term,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

25230: SELECT clc."Feature ID"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

26763: SELECT ["Chromosome"] AS seqname,
	["Chromosome region start"] AS
START, ["Chromosome region start"] AS [end],
	["RPKM"] AS score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGoRNAseq_exon_exp_1.txt]

28685: SELECT ["Gene Name"] AS Gene,
	["Transcripts annotated"] AS exons,
	["Expression values"] AS cds_rpkm,
	["Relative RPKM"] AS cds_relrpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

59743: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-GOdesc]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-HS-count.txt]cnt ON de.CGI_ID=cnt.[Feature ID]
WHERE GOSlim_bin LIKE 'death'

27049: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12)*100 AS feat_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

27044: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12)*100 AS Cov_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

28138: SELECT p.Column1,
	p.Column9,
	p.Column10
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

36063: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]GO ON d.SPID = GO.Entry

50748: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_TE_c2g.txt]te
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]slim ON te.CGI_ID=slim.CGI_ID
WHERE [aspect] = 'P'

24390: SELECT COUNT (*)
FROM
		(SELECT seqname,
				Rel_CpG_pos,
				methratio,
				GOSlim_bin
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
			WHERE aspect = 'P') foo

29040: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	C_count AS C_count,
	C_count/CT_count AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_T3D3_methylkit_s1]

24244: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS PLS
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd

25843: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON d.SPID = GO.SPID

59652: SELECT CGI_ID,
	GOslim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]sl ON deg.baseMean=sl.CGI_ID

50517: SELECT *,
	T1D5ratio + M3ratio AS Mean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrT1D5.txt]t1d5
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrM3.txt]m3 ON t1d5.T1D5loci=m3.M3loci

25683: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]

22631: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Beyer%'

28972: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	freqC AS freqC,
	1-freqC AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_M3mehthykit_step2]

59848: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]sl ON deg.baseMean=sl.CGI_ID
WHERE aspect LIKE 'P'

20102: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	min(column14),
	max(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

26882: SELECT COUNT (Column13)
FROM
		(SELECT column13,
				Column14
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]) ns
GROUP BY Column14

22627: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Emma%'

19673: SELECT ID,
	avg(NOmCpGcount),
	min(NOmCpGcount),
	max(NOmCpGcount),
	sum(NOmCpGcount),
	count(NOmCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_NOmCpG_2]
GROUP BY ID

25727: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

28137: SELECT p.Column1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

29642: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[DMRmgavery_mRNA_annotated]dmr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]sf ON dmr.gene_CGI = sf.CGI_ID

59646: SELECT CGI_ID,
	GOslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]sl ON deg.baseMean=sl.CGI_ID

49423: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_ensembl_tsv22]ts
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]GO ON ts.gene_stable_id = GO.CGI_ID

59853: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON sp.CGI_ID=de.baseMean

28250: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_OA_enrich445C9]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON g.Genes = sp.SPID

23924: SELECT CGI_ID,
	len(sequence) AS CDS_length
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

19878: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE Column8 > 20

69757: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_blastx_Pm_e50]
WHERE Column2 LIKE 'PMI_000464-RA'

28623: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3])t3d3

45020: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
WHERE M1ratio > 0.5
		AND M3ratio > 0.5

28843: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM,
	min(cds_rpkm) AS minRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

50752: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gene_intersect_TE_c2g.txt]te
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]slim ON te.CGI_ID=slim.CGI_ID

54959: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV UR10]ur
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON ur.ID = ds.CGI_ID

24392: SELECT DISTINCT seqname,
	Rel_CpG_pos,
	methratio,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
WHERE aspect = 'P'

51103: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON blast.Column3=GO.SPID

22553: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE '%stress%'

28641: SELECT DISTINCT COUNT (*)
FROM
		(SELECT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5)d

22552: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE 'stress%'

59724: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]GO ON de.basemean=GO.CGI_ID

25984: SELECT DISTINCT ContigID,
	GOSlim_bin,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE aspect LIKE 'P'
		AND evalue < 1E-10

28652: SELECT COUNT (*)
FROM
		(SELECT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5) ALIAS

59303: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_CpG.sorted]cpg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_GOslim.sorted]GO ON cpg.Column1=GO.Column1

50476: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG3x]c
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG3x]m ON c.Column1=m.Column1

22551: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE 's%'

28713: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM > 20000

28558: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
			WHERE context LIKE '__CG_'
					AND CT_count >= 5) ALIAS

59643: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]sl ON deg.baseMean=sl.CGI_ID

50519: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrT1D5.txt]t1d5
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrM3.txt]m3 ON t1d5.T1D5loci=m3.M3loci

22654: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE '%repro%'

54960: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]ds ON b.ID = ds.CGI_ID

39433: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE sequence LIKE '%ATTT%'
		AND [Gene ontology (GO)] LIKE '%immune%'

36061: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE term LIKE '%gly%'
		OR term LIKE '%immune%'
		OR term LIKE '%catab%'

54963: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]ds ON b.ID = ds.CGI_ID

26037: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) > 2

22656: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE term LIKE '%growth%'

22655: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE term LIKE '%repro%'

22549: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE aspect='P'

43644: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
			WHERE M1coverage <> ' ')ALIAS

28598: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
WHERE ratio > 0
		AND ratio < 0.25

29414: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE 'CGI_10010275'

20446: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_untitled (4).txt]
WHERE Percent_Meth >1

28552: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]) ALIAS

44995: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CGannot_Ensembl_feat]
WHERE Column1 LIKE 'C12806'

33602: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[mouse blast with treatments]
WHERE OA LIKE '%'

28610: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3])m3

28698: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM >0

20131: SELECT Column9,
	Column10,
	Column101
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Join_mRNA_allCG_mCpG]

24135: SELECT cds.Column9,
	cds.Column3
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds

43724: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
			WHERE CT_count >= 5
					AND context LIKE '__CG_')ALIAS

24980: SELECT Column2 - 1 AS NewColumn,
	Column3 + 1 AS AnotherNewColumn
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[Methylated_CG_BED_WholeGenome.bed]

25022: SELECT *,
	('EMP'+right('00'+CONVERT([varchar](5),[start]),(5))) AS newcol
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Mgo_gene_RNA-seq_IGV]

20550: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[MgoTophat_coverage_CDS_summ_cv]
WHERE cv >10

20063: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]

26891: SELECT [Column14],
	count([Column1])
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]
GROUP BY Column14

26878: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]) ns

18680: SELECT ContigID,
	SPID,
	[GO ID],
	term,
	GOSlim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_mod3_slim]
WHERE aspect LIKE 'Process'

28574: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_F])al

18654: SELECT SPID,
	[GO Name]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

25983: SELECT DISTINCT ContigID,
	GOSlim_bin,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE aspect LIKE 'P'

25854: SELECT DISTINCT ContigID,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE aspect LIKE 'P'

28557: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
			WHERE context LIKE '__CG_') ALIAS

28744: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 5
		AND COUNT < 50
		AND SUM > 100

26892: SELECT [Column14],
	count([Column1])
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]
GROUP BY Column14

29401: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE '%AMP-activated%'

22762: SELECT GOslim_bin,
	count(GOslim_bin)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dmr with GO slim]
WHERE aspect ='P'
GROUP BY GOslim_bin

29402: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE 'AMP-activated%'

26042: SELECT PeptideSequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) = 1

20444: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546TJGR_mRNA_int_mCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_allCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546TJGR_mRNA_int_mCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_allCpG].Column9

47057: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio = 0
		AND T1D5ratio = 0
		AND M3ratio >= 0.5
		AND T3D3ratio = 0
		AND T3D5ratio = 0

32189: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE [gig1] LIKE ' '

25986: SELECT DISTINCT ContigID,
	SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE evalue < 1E-10

28657: SELECT DISTINCT (["Gene name"])
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Transcripts annotated"] > 5

19974: SELECT Protein,
	MIN (Low1)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Skyline peptide areas for sql.txt]
GROUP BY Protein

20142: SELECT GENEID,
	Gil,
	swissprot
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Table S14.csv]

20116: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]

59264: SELECT *
FROM [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]
WHERE GeneName = 'eys spam CG33955'

36059: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE term LIKE '%gly%'
		OR term LIKE '%immune%'

27684: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE 'Vitell%'

20099: SELECT Column9,
	sum(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

20026: SELECT Column4
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (mRNA)" > 90

28860: SELECT min(exons),
	max(exons) AS Exon

27486: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_CCD_domain_concise_Superfamily_def]
WHERE Definition LIKE '%CpG%'

27676: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = '%vitello%'

49414: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10000001'

49415: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10011518'

44988: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID

62406: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'CGI_100004086%'

20125: SELECT Column1,
	sum(Column10)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_CDS_intersect_gillMBDmCpG]
GROUP BY Column1

27626: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10015174'

27624: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10004144'

27625: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10004146'

27630: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10008719'

27628: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10003883'

27629: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10008718'

27632: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10013762'

27614: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10006040'

27616: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10006403'

27619: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10009035'

27620: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10015357'

27618: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10006323'

27683: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description LIKE 'Act%'

27622: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10004145'

27635: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10011969'

27435: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10023379'

18605: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]

27681: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = 'Estro_'

27680: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = 'Estro%'

29766: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_genes]
			WHERE ["RPKM"] = 0) bety

59267: SELECT *
FROM [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]
WHERE ProteinName LIKE'%corn%'

62408: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'CGI_10004086'

26893: SELECT Column1,
	Column13,
	Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]

20081: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (mRNA)" < 20

62387: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID='CGI_100004806'

25324: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE '_rat_'

25325: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE '_pon_'

19855: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
WHERE Column15 < 100

19967: SELECT Protein,
	count(Low1)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Skyline peptide areas for sql.txt]
GROUP BY Protein

20188: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 20
		AND CG >10
		AND CDScount = 4

27682: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE description = 'Act%'

19690: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]

19969: SELECT Protein,
	count(Low1)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Skyline peptide areas for sql.txt]
GROUP BY Protein

20191: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth < 40
		AND CG >10
		AND CDScount = 10

25726: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]

28742: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 6
		AND COUNT < 50

50573: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS NEW
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

28733: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI%'

26050: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[pep peak areas all oysters2.txt]) GO

28580: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3]
			WHERE CT_count >= 5) ALIAS

19970: SELECT Protein,
	max(Low1)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Skyline peptide areas for sql.txt]
GROUP BY Protein

28672: SELECT ["Gene Name"] AS gene
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
GROUP BY ["Gene name"]

28749: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10008589'

22754: SELECT count(GOslim_bin)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dmr with GO slim]
GROUP BY GOslim_bin

19922: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA gene]
WHERE Column15 = 0

29416: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Gene Name] LIKE '%AMP-activated protein kinase%'

22755: SELECT GOslim_bin,
	count(GOslim_bin)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dmr with GO slim]
GROUP BY GOslim_bin

28678: SELECT ["Gene Name"] AS Gene,
	["Exons"] AS exons
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

28594: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio = 0.333)m3

43565: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_SexSpecific_File_S1]
WHERE [Mean Males] > [Mean Females]

20156: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth <20
		AND Gil >10
		AND CG >10

23820: SELECT Column3 AS POSITION
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]

28567: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE strand = '-') ALIAS

50569: SELECT *,
	[M1ratio]+[T1D3ratio]+[T1D5ratio]/3 AS nice
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

19908: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP]

18649: SELECT Taxon
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

26749: SELECT ["Chromosome region start"]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGoRNAseq_exon_exp_1.txt]

26897: SELECT DISTINCT A0A000 AS SPID,
	"GO:0003824" AS GOID
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt]

45012: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3M1_M3_CGfeature]
WHERE M1ratio > 0.5
		AND M3ratio > 0.5

30070: SELECT "2800 avg NSAF",
	"400 avg NSAF",
	"Gene Name"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[ETS_oaTable_S3]

29029: SELECT COUNT (*)
FROM
		(SELECT DISTINCT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim])ali

28554: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count < 5) ALIAS

28556: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]) ALIAS

22866: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_RepeatProteinMask_v9.txt]
WHERE METHOD = 'WUBlastx'

28559: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]) ALIAS

50568: SELECT *,
	[M1ratio]+[T1D3ratio]+[T1D5ratio] AS nice
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

22660: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Supplemental Table1 .txt]

41178: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vM3 <> ' '
		AND M1vT1D3 LIKE ' '

50751: SELECT DISTINCT CGI_ID,
	GOslim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]

28670: SELECT ["Gene Name"]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
GROUP BY ["Gene name"]

28746: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI%'

22628: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Mackenzie%'

25338: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '%gigas'

20096: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
WHERE Column14 > 2

20146: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done]
WHERE Gil > 10
		AND CG > 10
		AND CDScount > 3

24417: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
ORDER BY rev_G_count DESC

25335: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE 'human'

25327: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE 'gas'

20154: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth <20

20145: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done]
WHERE Gil > 10
		AND CG >10

41181: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 = ' '

24992: SELECT Count(*)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[primer 1 methylation status]
GROUP BY CAS001

19695: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 10

32205: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE gig1 = 'CGI%'

22630: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Claire%'

29028: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim])ali

50874: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]
WHERE Fgo < Mgo

28960: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_Cgigas_gene_fasta3F84B]

19692: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE (CDScount) > 2

19694: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 2

19886: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column10" > 20

27436: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[NSAF based on avg SpC with SPIDs]

19880: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column13" > 20

19881: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column12" < 20

19883: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column12" > 20

41190: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '
		AND M1vT1D5=''

19677: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]

48302: SELECT *
FROM [e0e25eb95946f0942c07f549905ba287649aaac7b4e59e0f55d10d58bd5321f3].[mRNA taxid6580 joined_uniprot_sprot2]
WHERE aspect = 'P'

28859: SELECT min(exons)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

29048: SELECT CGI_ID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]

20448: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_untitled (4).txt]
WHERE Percent_Meth > 50

20157: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth >80
		AND Gil >10
		AND CG >10

20060: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA gene]
WHERE Column15 <100

22629: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%Mac%'

22625: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Protein_Sequences]
WHERE ProteinSeq LIKE '%MIR%'

23821: SELECT Column1 AS Gene_ID,
	Column3 AS POSITION
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]

19879: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE "Column8" > 1

20155: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth <20
		AND Gil >10

45009: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3M1_M3_CGfeature]
WHERE M1ratio > 0

20912: SELECT A0A000 AS SPID,
	"GO:0003824" AS GOID
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt]

19877: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_cover_CDS_split_B]
WHERE Column8 >20

28734: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI_10026148'

43646: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
WHERE M1coverage <> ' '

36062: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE term LIKE '%metapl%'

28871: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill_exon_stdev_avg]
WHERE Exon

20120: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gil_Exp_coverage_CDS_SummaryStats]
WHERE Column4 >0

25344: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Designed By" LIKE '%chi%'

39445: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange > 2

22662: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Supplemental Table1 .txt]
WHERE "Feature ID" = '%c10100'

19854: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]

28576: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_F]
			WHERE CT_count >=5)al

20134: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene]
WHERE SUM > 10

28630: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Transcripts annotated"] > 5

18655: SELECT SPID,
	[GO Name],
	Aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

255548: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410]

28575: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_F]
			WHERE CT_count <5)al

25034: SELECT count(*)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sr primer 1 methylation status.csv]

43721: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam])ALIAS

29409: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_v9_gene]
WHERE Column9 LIKE '%CGI_10003983%'

29412: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE 'CGI_10010273'

20139: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene]
WHERE CG > 10

19648: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]

19020: SELECT c2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module4_blast.csv]

28579: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3]) ALIAS

19907: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mCpG_5x50_closest_MgoSNP]
WHERE Column17 < 1

50567: SELECT *,
	[mean]+[T1D5ratio] AS nice
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

33601: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[mouse blast with treatments]
WHERE OA LIKE '*'

20068: SELECT Column21
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[mRNA_intersect_mCpGovSNP with gene names]

25333: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "date ordered" LIKE '_7'

36058: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE term LIKE '%gly%'

251582: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_gill_htbisulfiteseq_cg_methylated.txt]

28739: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 6

41192: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '
		AND M1vT1D5 = NULL

40977: SELECT *,
	"Column1",
	'Column2'
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_methratio_CgM1]

41016: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_methratio_CgM1_id]
WHERE Column6 = 'NA'

50566: SELECT [mean]+[T1D5ratio] AS nice
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

42557: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_GPL11353_v6ref]
WHERE RPKM > 2000

19647: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546TJGR_mRNA_int_mCpG_2]

18687: SELECT Evidence,
	[GO ID]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

24991: SELECT Count(*)
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[primer 1 methylation status]

23832: SELECT LEN(sequence) AS please
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

22544: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE aspect='P'

24995: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[primer 1 methylation status]

33600: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[mouse blast with treatments]
WHERE OA = '*'

41139: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final]
WHERE [T3D3_start] > 0.5

19680: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG]

35789: SELECT SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]

20551: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[MgoTophat_coverage_CDS_summ_cv]
WHERE cv > 1

20017: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Ratio mCDS/mIntron" > 2

41017: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratch_methratio_out]
WHERE ratio = 'NA'

29411: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OABS_ETS_S3]
WHERE [Protein ID] LIKE '%03983'

28582: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3])m3

47064: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0.5
		AND T1D3ratio < 0.2
		AND T1D5ratio > 0.5

28870: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill_exon_stdev_avg]
WHERE Exon

19667: SELECT ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]

40973: SELECT *,
	Column1,
	Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_methratio_CgM1]

28846: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]

18653: SELECT Taxon,
	[GO ID]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

50564: SELECT 'mean'+'T1D5' AS nice
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]

41180: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 LIKE ' '

18627: SELECT ID,
	Symbol
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Billy]

256739: SELECT gene,
	max(exons) AS exon

41196: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR2]
WHERE M1vM3 <> '-'

23923: SELECT CGI_ID,
	len(sequence)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

18684: SELECT SPID,
	GENEID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

19652: SELECT SUM (mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]

21887: SELECT *
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[TJGR_Gene_SPID_evalue_Description.txt]

26008: SELECT DISTINCT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[ProtPep for all oysters.txt]

18629: SELECT ID,
	Symbol,
	Aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Billy]

28848: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE minRPKM >0

41183: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vT1D3 <> ' '

59696: SELECT CGI_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]

32206: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE gig1 LIKE 'CGI%'

20094: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]

22667: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGO_CG_Gal_17]
WHERE Column5 > 0

41176: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR]
WHERE M1vM3 <> ' '

26898: SELECT *
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]

250031: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_piura_v1_cpg.sorted]

250150: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_piura_v1_goslim.sorted]

253664: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dheilly_sexspecific_file_s1]s1
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sig6_blastn_sig9]ss ON s1.[genbank acc]=ss.column4

250479: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlrm3.txt5d55b]

250600: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlrt1d3.txt18e52]

252390: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_te_oysterv9_90.txt]

250965: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlrt3d3.txt35e43]

251157: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module4_blast_v2.csv]

251194: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlrt3d5.txt3eb56]

25852: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]

254700: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_ye_control_22smcg5x4e2fe]

32209: SELECT *
FROM [18ecbbd8704dcd6ee92fecb78b7cbe2d3c5d143658b22d2e85a4fc1ad4be7b6b].[OGOP2]
WHERE gig1 LIKE '%'

45007: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]
WHERE M3ratio > 0

254636: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas-deglist-sql]

20441: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_allCpG]

20909: SELECT A0A000 AS SPID
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[SPID_GOnumber.txt]

20138: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene]

20119: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gil_Exp_coverage_CDS_SummaryStats]

254655: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_dmrmgavery_mrna_annotated2fe85]

20151: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done]

54962: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim_DISTINCT]

59694: SELECT CGI_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-RNAseq-HS-goslim]

20869: SELECT *
FROM [f2c456d62d92d7248b77adeca74d7ce247c647f2f66b90540b676503602547c7].[goslim_generic.obo]

251356: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_lft_blackabalone_v3_tab_1.txt]

24416: SELECT seqname
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A_GFF]

19904: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mCpG_5x50_closest_MgoSNP]

39409: SELECT *
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAbalone_contig_GOSlim_BP]

24725: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]

252649: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_uniprot-reviewed_wgo.tab]

256861: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill exon minexp]ex
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill percent methtxt]me ON ex.gene = me.id

28968: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]

54964: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GOslim_DISTINCT]

22539: SELECT aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]

30084: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08_uniprot_blastx_out]

22530: SELECT CGI_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]

253479: SELECT *
FROM [materialized_new table snapshot]

59201: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_uniprot_sprot_sql.tab]

62409: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas Larvae RNA-Seq OsHV]

21009: SELECT SPID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[ETS Annotated Proteins]

28872: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon minexp]

24017: SELECT top 1 *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[New table snapshot]

34784: SELECT *
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[Joined PNitzschia Files]

20122: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_exp_cds_summ_avgg0]

23818: SELECT Column3
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]

28162: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Table S14.csv]

20153: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]

18704: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SP.txt]

250000: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m39b3c0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m36883a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3b8b08]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3c98ab]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3a8ec8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3853f2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m30d829]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3849bc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3a7b93]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m372c1e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m36e5e4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m386e90]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m314159]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3694dd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3464f8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m38b94a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m34a94b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m373932]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3fd57d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m37aabb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3977f4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m388396]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3c5673]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_m3d9297]

250114: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_uniprot_sprot_sq.tabf4304]

250087: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gil_cov_cds_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt]

250237: SELECT cd.column9 AS seqname,
	cd.column2 AS SOURCE,
	cd.column3 AS feature,
	CASE
					WHEN column7 = '+' THEN column4 - mrna_start + 1
					ELSE mrna_end - column5 + 1
	END AS
START, CASE
											WHEN column7 = '+' THEN column5 - mrna_start + 1
											ELSE mrna_end - column4 + 1
							END AS [end],
	cd.column6 AS score,
	cd.column7 AS strand,
	cd.column6 AS frame,
	cd.column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cds gff with gene start and stop] cd

250171: SELECT DISTINCT seqname,
	rel_cpg_pos,
	methratio,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_gene_methratio_vd_rmdup.csv]
WHERE aspect = 'p'

250227: SELECT [chr],
	cast([pos] AS integer) AS [pos],
	[strand],
	[context],
	cast([ratio] AS float) AS [ratio],
	cast([eff_ct_count] AS integer) AS [eff_ct_count],
	cast([c_count] AS integer) AS [c_count],
	cast([ct_count] AS integer) AS [ct_count],
	cast([rev_g_count] AS integer) AS [rev_g_count],
	cast([ci_lower] AS float) AS [ci_lower],
	cast([ci_upper] AS float) AS [ci_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_mito_methratio_a.txt]
WHERE [ratio] <> 'na'

250266: SELECT geneid,
	gil,
	swissprot
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_table s14.csv]

250328: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_gil]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gill_meth_cdsexpression_gene] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_gil].geneid=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gill_meth_cdsexpression_gene].id

250449: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_untitled (4).txt]

252149: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_m3]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

250498: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat0b539]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat72645]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat161c7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat9c359]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat0be0d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat1fd8a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat6183d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat5296c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feataa6ba]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featcf5c2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat5f270]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feateea96]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat9e4d6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featfb31e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat76675]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feateb855]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat1c0b7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat55b42]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat63c16]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat573d5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featfbcec]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat1aa5f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat4dc34]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat15beb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featf202f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat6a4e0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featcee97]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featbd9b6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat6f7ed]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat621b0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_featef032]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgannot_ensembl_feat74194]

254577: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgotophat_coverage_cds_summ_cv]

253784: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_t1d5af4cd]

250653: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_f1d7d2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_f123d2]

250654: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_0003-datas3.txt]

252573: SELECT id,
	sum(mcpgcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_cds_int_mcpg_2]
GROUP BY id

28146: SELECT p.Column9 AS GeneID,
	p.Column10 AS CGcount,
	m.Column10 AS mCGcount,
	CASE
					WHEN p.Column10 = '0' THEN m.Column10
					ELSE m.Column10/p.Column10
	END AS PerMeth
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

251040: SELECT column1 AS column1,
	'flankbed' AS column2,
	column3 AS column3,
	column4 AS column4,
	column5 AS column5,
	'.' AS column6,
	column7 AS column7,
	column8 AS column8,
	column9 AS column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_v9_1k5p_gene_promoter.gff]

251127: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ostrea_lurida_fasta.tabular]

251197: SELECT contigid,
	spid,
	[go id],
	term,
	goslim_bin,
	aspect
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_mod3_slim]
WHERE aspect LIKE 'process'

251245: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0818a1a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0857477]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08d41cb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0860679]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0807e99]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a086e438]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a088fcff]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0830265]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08bb714]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08f1bc5]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08e9cc0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08be7b7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a082b965]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0869a3b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08a9a89]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08c5f64]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08fe4a3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a089827a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0885b29]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0826eb6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a085c21d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a084ba49]

251355: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_ccd_dom_con_s_define2.txt]

252314: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_174ce39]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_173c4e3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17b80bb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_170bb53]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_170f2b2]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_171e929]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_177eeed]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_1713211]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17d6830]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17f6d64]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17b0c47]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17e372b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17d4e8d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_179b5de]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17acf44]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17aa150]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17cb392]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17327ef]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_176f093]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_172ef20]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_1711718]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_1774819]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17c8a4f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17b8495]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_17ba286]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_1711f8d]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_cg_gal_1762866]

251400: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_thbam_cov_exon_2.txt]

251414: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t3d3]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

251459: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_rnaseq_exonda06d]

251633: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_blackabalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wgo_010714]GO ON d.spid = GO.entry

251743: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_repeatproteinmask_v9.txt]

251775: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_gene_intersect_dml_lin_wb_b.txtfe4fe]

251885: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_repeatmasker_v9_gff]

25248: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	ex."Target description",
	ex."GO enrichment",
	ex."GO biological process",
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means",
	ex.RPKM1 AS SuppRPKM1,
	clc."1000 - Means",
	ex.RPKM AS SuppRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

252134: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546tjgr_mrna_int_nomcpg_2]

252212: SELECT chr AS chr,
START AS
START, strand AS strand,
	ct_count AS ct_count,
	c_count AS c_count,
	c_count/ct_count AS freqc
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_m3methylkit_s1]

252165: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]

24254: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	CASE
					WHEN Column7 = '+' THEN Column5 - Column4
					ELSE Column4 - Column5
	END AS exon_size
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

252242: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_rnaseq_genes]

252362: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_prom_subgene_mcgcount.txt]

252433: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_mcpgovsnp]

252512: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546tjgr_cds_int_mcpg_2]

252535: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oa_bs_ets_table s3.txt]

252637: SELECT [chr],
	cast([pos] AS integer) AS [pos],
	[strand],
	[context],
	cast([ratio] AS float) AS [ratio],
	cast([eff_ct_count] AS integer) AS [eff_ct_count],
	cast([c_count] AS integer) AS [c_count],
	cast([ct_count] AS integer) AS [ct_count],
	cast([rev_g_count] AS integer) AS [rev_g_count],
	cast([ci_lower] AS float) AS [ci_lower],
	cast([ci_upper] AS float) AS [ci_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_m3]
WHERE [ratio] <> 'na'
		AND context LIKE '__cg_'
		AND ct_count >= 5

252734: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oams_skylinedata.csv]
WHERE precursorcharge = 2
		AND fragmention LIKE 'precursor'

252745: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_gene_permeth.txt]

252820: SELECT id,
	avg(nomcpgcount),
	min(nomcpgcount),
	max(nomcpgcount),
	sum(nomcpgcount),
	count(nomcpgcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_cds_int_nomcpg_2]
GROUP BY id

252929: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sigenae_cgigas_all_contigs.tab]

252969: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_clc_ruphi_400_1000.csv]

252989: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cpgmeth_clusters_100_4_v9_90_closest_mrna.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_go_bigfile] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cpgmeth_clusters_100_4_v9_90_closest_mrna.txt].column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_go_bigfile].column1
WHERE column15 < 100

253087: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[clcvexcel_ruphirnaseq]
WHERE "go enrichment" LIKE '*'

253113: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_annotated protpep.txt]

253120: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_aggco oyster bisulfite mrna and cds.tab]

253157: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phelv3_uniprot_sprot_sql.tab4d7b9]

253249: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5b70fd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d55bf04]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5e8f4f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d540d71]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5d207f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d524945]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5bd7b0]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d501b81]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d578a00]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d57e5fb]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d528e90]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d569193]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5ba3ca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d588509]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5e34ca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5eda0f]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d541d80]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5c5dd8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5d6360]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d54f7de]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t3d5d8d82]

253368: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigill_methratio_gene_genomic_gff]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod cgigas gene descriptions (swiss-prot)]sp ON g.seqname = sp.cgi_id

39444: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange > 1.5

253694: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_mrna_gff.txt]

253697: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[expressedgene_meth4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod cgigas gene descriptions (swiss-prot)]sp ON g.id = sp.cgi_id

25247: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	ex."Target description",
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means",
	ex.RPKM1 AS SuppRPKM1,
	clc."1000 - Means",
	ex.RPKM AS SuppRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

253849: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sq_cglarv_lineage_1.txtd31a1]

253870: SELECT *
FROM [materialized_snapshot2]

254023: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_t3d33b238]

254262: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt3_t3d506299]

254227: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_primerdatabase - primers.csv]

254272: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_uniprot_sprot_r2013_12_blastx_out24b6b]

254307: SELECT column1 AS contigid,
	column5 AS spid,
	column17 AS evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_lft_blackabalone_v3_swissprot_blastout_d]

254369: SELECT DISTINCT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_blackabalone_v3_swissprot_blastout_d]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[spid and go numbers]GO ON d.spid = GO.spid
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[go_to_goslim]slim ON GO.goid = slim.go_id

257693: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_cds_intersect_allcpg]

50615: SELECT *,
	([M3ratio]+[T3D5ratio]+[T3D5ratio])/3 AS mean3
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M3.txt]m3
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T3D5.txt]t3d5 ON m3.loci=t3d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T3D3.txt]t3d3 ON m3.loci=t3d3.loci
WHERE [M3ratio]-(([M3ratio]+[T3D3ratio]+[T3D5ratio])/3) < abs(.2)
		AND [T3D3ratio]-(([M3ratio]+[T3D3ratio]+[T3D5ratio])/3) < abs(.2)
		AND [T3D5ratio]-(([M3ratio]+[T3D3ratio]+[T3D5ratio])/3) < abs(.2)

24330: SELECT cd.Column1,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

24331: SELECT cd.Column9,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

59298: SELECT DISTINCT Column1,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_uniprot_sprot_sql.tab]p
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]sp ON p.Column3=sp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON p.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect LIKE 'P'

23817: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt] mr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_gene_length.txt] lg ON mr.Column1 = lg.gID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim] slim ON lg.gID = slim."CGI_ID"
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_oyster_gene_exon_number] ex ON lg.gID = ex.CGI_ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq] exp ON lg.gID = exp."Feature ID"

24258: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

29208: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D5]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29205: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T1D5]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29188: SELECT chr AS chr,
	pos AS
START, chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	'+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

59371: SELECT Column1,
	term,
	GOSlim_bin,
	aspect,
	ProteinName
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_uniprot_sprot_sql.tab]p
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]sp ON p.Column3=sp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON p.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect LIKE 'P'
		AND ProteinName LIKE '%heat%'

24334: SELECT cd.Column9,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	cd.Column6
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

20044: SELECT ID,
	"Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 0
		AND "Sum mRNA" > 50

29186: SELECT chr AS chr,
	pos AS
START, chr + '_' + strand AS chr_start,
	'+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

28826: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	len(sequence) AS sequence_len,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

20041: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 100

20042: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 0

28808: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

28803: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	len(sequence)- len(REPLACE(sequence, 'G', ''))/len(sequence)- len(REPLACE(sequence, 'C', '')) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

24251: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

28145: SELECT p.Column1 AS Scaffold,
	p.Column9 AS GeneID,
	p.Column10 AS CGcount,
	m.Column10 AS mCGcount,
	CASE
					WHEN p.Column10 = '0' THEN m.Column10
					ELSE m.Column10/p.Column10
	END AS PerMeth
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

19920: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column14 > 0

19925: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column15 < 100

50601: SELECT *,
	([M1ratio]+[T1D5ratio]+[T1D5ratio])/3 AS mean1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci
WHERE [M1ratio]-(([M1ratio]+[T1D5ratio]+[T1D5ratio])/3) < abs(.2)

54876: SELECT *,
	([M1ratio]+[M3ratio])/2 AS meanmales
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE [M1ratio]-(([M1ratio]+[M3ratio])/2) < abs(.2)
		AND [M3ratio] - (([M1ratio]+[M3ratio])/2) < abs(.2)

54870: SELECT *,
	([M1ratio]+[M3ratio])/2 AS meanmales
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE [M1ratio]-(([M1ratio]+[M3ratio])/2) < abs(.2)
		AND [M3ratio] - (([M1ratio]+[M3ratio])/2) < abs(.2)

26754: SELECT ["Chromosome"] AS seqname,
	'CLC_RNAseq' AS SOURCE,
	'TranscriptExp' AS feature,
	["Chromosome region start"] AS
START, ["Chromosome region start"] AS [end],
	["RPKM"] AS score,
	'.' AS strand,
	'.' AS frame,
	["Gene name"] AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGoRNAseq_exon_exp_1.txt]

19913: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP].Column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column10 > 1

28501: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGo_lar_M3] m3
WHERE context LIKE '__CG_'

27041: SELECT Column1,
	Column4,
	Column5,
	'BiGillExonExp' AS Column4
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

29047: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

21968: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_QPX_Experiment_UniqueReads_simple.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[QPX_CLC_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_Kal_tab.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_QPX_Experiment_UniqueReads_simple.txt]."Feature ID"=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[QPX_CLC_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_Kal_tab.txt]."Feature ID"

24090: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-8)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24096: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 4, CHARINDEX(';', Column9)-8)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF]

24097: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 4, CHARINDEX(';', Column9)-4)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF]

20034: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 100

24163: SELECT cds.Column1,
	cds.Column2,
	cds.Column3,
	cds.Column4 - mRNA.Column4 +1 AS
START, cds.Column5 - mRNA.Column4 +1 AS [End],
	cds.Column6
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

20129: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_allCpG]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_gillMBDmCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_allCpG].Column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_gillMBDmCpG].Column9

19713: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS].ID

23723: SELECT Column1, Column3, LENGTH, ((Column3 / LENGTH)*100),Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

27042: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	Column10 / Column12 AS Cov_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

26292: SELECT Column1 AS Column1,
	'flankbed' AS Column2,
	Column3 AS Column3,
	Column4 AS Column4,
	Column5 AS Column5,
	'.' AS Column6,
	Column7 AS Column7,
	Column8 AS Column8,
	Column9 AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Cgigas_v9_1k5p_gene_promoter.gff]

59851: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON sp.CGI_ID=de.baseMean

51600: SELECT Contig
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_sig_normalized_exp]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_clc_wID_info]des ON sig.contig=des.Column1

22520: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] cgsp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ass ON cgsp.SPID = ass.ID

28979: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	C_count AS C_count,
	C_count/CT_count AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_T3D3_methylkit_s1]

49409: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_HSarray_hypo_genes]hypo
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON hypo.Gene = sp.CGI_ID

42493: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNA_genetable_clc]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON clc.["Name"]=sp.CGI_ID

59625: SELECT SPID,
	basemean
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

29391: 
SET rowcount 10
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]

24727: SELECT Chromosome AS feature,
	"Chromosome region start" - 1 AS
START, "Chromosome region end" AS [end],
	RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]

30086: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08_uniprot_blastx_out] blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID

26045: SELECT COUNT (*)
FROM
		(SELECT PeptideSequence,
				count(*) AS cnt
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
			GROUP BY [PeptideSequence]
			HAVING COUNT (*) = 1) GO

33785: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_OlyMFdeg.txt]deg
LEFT JOIN [16cb3c1f300d170e608871ac9acbb828bdfcc6c157b5d014cf7ef4a14dce7d27].[Olympia Oyster Uniprot_swissprot with SPID]id ON deg.Column1 = id.Column1

26011: SELECT PeptideSequence,
	sum([11_01 TotalArea]) AS [11_01 TotalArea]
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[pep peak areas all oysters.txt]
GROUP BY PeptideSequence

24159: SELECT cds.*,
	mRNA.Column4
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

42538: SELECT Column1,
	Column3
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]v6 ON ar.ContigName=v6.Column1

19700: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" > 90
		AND "Percent mCpG (Intron)" < 20

19701: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" > 90
		AND "Percent mCpG (Intron)" < 50

35786: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_DEgene_out]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON deg.gene_name = sp.CGI_ID

50465: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG5x]m
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG5x]c ON m.scaffm=c.scaffc
WHERE scaffc <> ' '

26879: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]) ns
GROUP BY Column14

69358: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column1=up.Entry

28153: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGo_gene_PerMeth.txt]gene
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_genes]exp ON gene.GeneID = exp.["Feature ID"]

28865: SELECT Gene,
	max(exons) AS Exon

69356: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column1=up.Entry

59856: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON de.baseMean=sp.CGI_ID

28876: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGillExp_withMeth]me
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description]id ON me.Gene = id.Column1

25985: SELECT DISTINCT ContigID,
	GOSlim_bin,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE evalue < 1E-10

22745: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[DMR2] dmr2
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers] ass ON dmr2.Column4 = ass.SPID

28693: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM,
	min(cds_rpkm) AS minRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

23823: SELECT Column1 AS Gene_ID,
	Column3 AS POSITION,
	Column5 AS Meth_ratio,
	LENGTH,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]
WHERE LENGTH > 2000

25340: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '%gigas'
		OR Organism LIKE '%oyst%'
		AND "Designed By" LIKE 'Brad%'

59618: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

29640: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[DMRmgavery_mRNA_annotated]dmr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]sf ON dmr.gene_CGI = sf.CGI_ID

43717: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

50820: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_SexSpecific_File_S1]s1
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Sig6_blastn_Sig9]ss ON s1.[Genbank Acc]=ss.Column4

39411: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_tab]fa
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_CLC_count]clc ON fa.contigID=clc."Feature ID"

43719: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

28573: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5
					AND context LIKE '__CG_'
					AND ratio <> '0.000') ALIAS

28684: SELECT ["Gene Name"] AS Gene,
	["Transcripts annotated"] AS exons,
	["Expression values"] AS cds_rpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

23807: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt] mr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qDOD_gene_length.txt] lg ON mr.Column1 = lg.gID

19666: SELECT ID,
	avg(mCpGcount),
	min(mCpGcount),
	max(mCpGcount),
	sum(mCpGcount),
	count(mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]
GROUP BY ID

27081: SELECT Column1,
	Column4,
	Column4,
	'BiGill_cgM' AS feature,
	Column6
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_gill_HTbisulfiteSeq_CG_methylated.txt]

50620: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3

59728: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-GOdesc]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-HS-count.txt]cnt ON de.CGI_ID=cnt.[Feature ID]

50578: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] <.2

28703: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
			WHERE avgRPKM >5
					AND NumEx >5
					AND NumEx <20)aliea

24385: SELECT DISTINCT seqname,
	Rel_CpG_pos,
	methratio,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
WHERE aspect = 'P'

21891: SELECT Column1 AS CGI_ID,
	Column2 AS SPID,
	Column3 AS evalue,
	Column5 AS Description
FROM [51dfd5d41e70fe79aa54ada26cceee90430c4020d8bfab1047dd2850bbcbf1e9].[TJGR_Gene_SPID_evalue_Description.txt]

26880: SELECT COUNT (*)
FROM
		(SELECT Column14
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]) ns
GROUP BY Column14

28682: SELECT ["Gene Name"] AS Gene,
	["Transcripts annotated"] AS exons,
	["Expression values"] AS RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

42536: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]v6 ON ar.ContigName=v6.Column1

28873: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon minexp]ex
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill percent methtxt]me ON ex.Gene = me.ID

28681: SELECT ["Gene Name"] AS Gene,
	["Exons"] AS exons,
	["Transcripts annotated"] AS RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

50475: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG3x]c
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG3x]m ON c.Column1=m.Column1

42519: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

50464: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG5x]m
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG5x]c ON m.scaffm=c.scaffc

22652: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE Description LIKE '%growth%'

28711: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM > 1000

22653: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE '%growth%'

19721: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" > 75
		AND "Percent mCpG (Intron)" < 25

19753: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" < 75
		AND "Percent mCpG (Intron)" > 25

42555: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNA_array_v6]rna
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]arr ON rna.Sig_No=arr.ContigName

22610: SELECT CGI_ID,
	evalue,
	Description,
	SPID,
	GOID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE GOSlim_bin LIKE '%death%'

28864: SELECT Gene,
	max(exons) AS Exon

28842: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM,
	min(cds_rpkm) AS minRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

28639: SELECT COUNT (*)
FROM
		(SELECT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5)d

42554: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNA_array_v6]rna
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]arr ON rna.Sig_No=arr.ContigName

24386: SELECT seqname,
	Rel_CpG_pos,
	methratio,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_BiGill_Gene_Methratio_VD_rmdup.csv]
WHERE aspect = 'P'

20020: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (mRNA)" > 90
		AND "Percent mCpG (Intron)" < 20

50577: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] > 0

20021: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (CDS)" > 90
		AND "Percent mCpG (Intron)" < 20

20022: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (CDS)" > 80
		AND "Percent mCpG (Intron)" < 20

20072: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (CDS)" > 80
		AND "Percent mCpG (Intron)" < 20

20065: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
WHERE "SUM mRNA" > 50
		AND "Percent mCpG (mRNA)" > 80

20030: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 20
		AND "Percent mCpG (Intron)" > 70
		AND "Percent mCpG (CDS)" < 30

20031: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 20
		AND "Percent mCpG (Intron)" > 80
		AND "Percent mCpG (CDS)" < 20

50510: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrT1D5.txt]t1d5
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrM3.txt]m3 ON t1d5.T1D5loci=m3.M3loci

19665: SELECT ID,
	avg(mCpGcount),
	min(mCpGcount),
	max(mCpGcount),
	sum(mCpGcount)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2]
GROUP BY ID

29399: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE Description LIKE 'AMP-activated protein kinase'

57844: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[merc_slim]sl
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[merc_ID_CpG_1.tab]cpg ON sl.Column1=cpg.Column1

26889: SELECT [Column14],
	count([Column11])
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]
GROUP BY Column14

50507: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrT1D5.txt]t1d5
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlrM3.txt]m3 ON t1d5.T1D5loci=m3.M3loci

23822: SELECT Column1 AS Gene_ID,
	Column3 AS POSITION,
	Column5 AS Meth_ratio,
	LENGTH,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Making Pictures]

28680: SELECT ["Gene Name"] AS Gene,
	["Exons"] AS exons,
	["Expression values"] AS RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]

26287: SELECT Column1 AS Column1,
	Column2 AS Column2,
	'intron' AS Column3
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Cgigas_v9_intron.gff]

19703: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Ratio mCDS/mIntron" > 3

19715: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "SUM mRNA" > 100
		AND "Ratio mCDS/mIntron" > 3
		AND "CDScount" > 20

28692: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

28818: SELECT Column1,
	len(Column2)- len(REPLACE(Column2, 'N', '')) AS Ncount
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_scaffold_sequence.txt]

19698: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" > 90

24625: SELECT Chromosome,
	"Chromosome region start",
	"Chromosome region end"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]

26027: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_SkylineData.csv]
WHERE PrecursorCharge = 2
		AND Fragmention LIKE 'precursor'

20097: SELECT Column1,
	Column4,
	Column5,
	Column14
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
WHERE Column14 > 2

39438: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange > 2
		AND Status LIKE 'reviewed'

28743: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 5
		AND COUNT < 50
		AND SUM > 10

28570: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE CT_count >= 5
					AND strand = '+') ALIAS

28705: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20

29051: SELECT CGI_ID,
	term,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_GO_GOslim]
WHERE aspect = 'P'

25036: SELECT count(CAS001MethStat)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sr primer 1 methylation status.csv]
GROUP BY ID

28648: SELECT DISTINCT (["Gene name"])
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Transcripts annotated"] > 5

30108: SELECT DISTINCT Column1 AS query,
	Column3 AS SPID,
	GOSlim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchjoin_slim]

26265: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]

27485: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_CCD_domain_concise_Superfamily_def]
WHERE Definition LIKE '%repeat%'

44980: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[CGannot_Ensembl_feat_IDColumn_FINAL]
WHERE M1ratio <> ' '
		AND M3ratio <> ' '

23873: SELECT Len(sequence)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]
WHERE CGI_ID LIKE '%CGI_10000162%'

20074: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (mRNA)" > 80

27623: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10004144   '

59268: SELECT *
FROM [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]
WHERE ProteinName LIKE '%immune%'

28691: SELECT Gene,
	min(exons),
	max(exons)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

59265: SELECT *
FROM [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]
WHERE ProteinName = '%immune%'

19696: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 10
		AND CDScount = 9

27909: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]
WHERE [Feature ID] = 'CGI_10000009'

25336: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE 'C.gigas'

20064: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
WHERE "SUM mRNA" > 50

28861: SELECT Gene,
	max(exons) AS Exon

59266: SELECT *
FROM [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]
WHERE ProteinName = '%corn%'

62388: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID='CGI_10004806'

20061: SELECT Column21
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA gene]
WHERE Column15 <100

19678: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2],
	[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG]

27912: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]
WHERE [Feature ID] = 'CGI_10000009 '

20019: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (mRNA)" > 90

20194: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 60
		AND CG >10
		AND CDScount = 10

29643: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE '27416'

28750: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10014148'

28751: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10028140'

43725: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
			WHERE CT_count >= 5)ALIAS

25035: SELECT count(*)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sr primer 1 methylation status.csv]
GROUP BY ID

28784: SELECT len(sequence)- len(REPLACE(sequence, 'C', ''))
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

50873: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]
WHERE Fgo > Mgo

22663: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Supplemental Table1 .txt]
WHERE "Feature ID" LIKE '%c10100'

28740: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_exonexp_gene.txt]
WHERE COUNT > 6
		AND COUNT < 50

25331: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE 'rat'

28735: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI_10024475'

28737: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
WHERE ["Gene Name"] LIKE 'CGI_10010090'

62404: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID LIKE 'C%'

25326: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE '_.gigas_'

25343: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Designed By" LIKE 'Brad%'

20135: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene]
WHERE SUM > 10
		AND CG >10

26895: SELECT Column1,
	Column13
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_unmapped_nt_blastout_taxa2]

62403: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE SPID LIKE 'Q%'

28595: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio = 0)m3

24979: SELECT Column2 - 1 AS NewColumn
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[Methylated_CG_BED_WholeGenome.bed]

28690: SELECT Gene,
	min(exons)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

39431: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE sequence LIKE '%ATTT%'

25322: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE '_oy_'

25337: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '_gigas'

20095: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
WHERE Column10 >100

18682: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]

20140: SELECT GENEID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Table S14.csv]

20445: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_untitled (4).txt]

20130: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Join_mRNA_allCG_mCpG]

27627: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]
WHERE CGI_ID = 'CGI_10004181'

255786: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_file_s1_2.txt]

20144: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done]

250112: SELECT seqname,
	rel_cpg_pos,
	methratio,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_gene_methratio_vd_rmdup.csv]
WHERE aspect = 'p'

250160: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_mito_methratio_a.txt]

45025: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID

254569: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_meth_combinedcg_mrna.txt]

50672: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.3

250406: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_robertslab_ge_f3 trimmed rna-seq.txt]oshv
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod cgigas gene descriptions (swiss-prot)]des ON oshv.id = des.cgi_id
WHERE uniquereads >=10

23716: SELECT Column1, Column3, LENGTH, (Column3 / LENGTH)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

59855: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON de.baseMean=sp.CGI_ID

54878: SELECT *,
	([M1ratio]+[M3ratio])/2 AS meanmales
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE [M1ratio]-(([M1ratio]+[M3ratio])/2) > abs(.2)

250853: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlrt1d5.txtf40cd]

28568: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
			WHERE strand = '+') ALIAS

251041: SELECT c2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module4_blast.csv]

251139: SELECT *
FROM [materialized_snapshot_spid and go numbers]

251155: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_m1]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

18681: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410].ID

28801: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

62351: SELECT Column1,
	Column2,
	Column3,
	Column4,
	Column5,
	Column6,
	Column7,
	Column8,
	Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cuffdiffgenes.sorted_by_expression.sig.txt]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_rebuilt.gtf.geneIDend]id ON sig.gene_ID=id.Column10

251353: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_m3]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

23727: SELECT Column1,
	Column3,
	LENGTH,
	Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

251474: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count,
	CAST (c_count AS float) / CAST (ct_count AS float) AS freqc,
	1 - (CAST (c_count AS float) / CAST (ct_count AS float)) AS freqt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_t3d5]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

19923: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1

18690: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410].ID

18691: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_module1_blast_table].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[associations_uni_swisspro_012410].ID

251799: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_blackabalone_v3_tab]fa
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_clc_count]clc ON fa.contigid=clc."feature id"
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[blackab_deseq_fold_pvalue.csv]de ON fa.contigid=de.id
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[lft_blackabalone_sp_go_path.csv]sp ON fa.contigid=sp.contigid

24327: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

28190: SELECT id,
	foldChange,
	pval,
	blast.Column3,
	Column11 AS evalue
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAB_DESeq.txt]d
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAbalone_Contigs_v3_BLAST.txt]blast ON d.id=blast.Column1
WHERE Column11 < 1E-10

252091: SELECT *
FROM [materialized_bigill_meth_zhang_exp]

252225: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].spid=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].id

28795: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS C,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS G,
	(len(sequence)- len(REPLACE(sequence, 'CG', '')))/2 AS CG,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

252326: SELECT chr AS chr,
START AS
START, strand AS strand,
	ct_count AS ct_count,
	c_count AS c_count,
	c_count/ct_count AS freqc
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_t3d3_methylkit_s1]

50594: SELECT *,
	[M1ratio]+[T1D5ratio]+[T1D5ratio]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

29756: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

28786: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS C,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS G,
	len(sequence)- len(REPLACE(sequence, 'CG', '')) AS CG,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

24241: SELECT cds.*,
	mRNA.Column4 AS mRNA_start,
	mRNA.Column5 AS mRNA_end
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Snapshot of CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9
ORDER BY Column1 DESC

28785: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS C,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS G,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS CG,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

29754: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__C__'

29737: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CA_'

29738: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CC_'

29739: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CT_'

26904: SELECT id,
	foldchange,
	pval,
	de.Column3 AS SPID,
	evalue,
	Column13 AS NCBI_nt_Des
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

54886: SELECT *,
	([M1ratio]-[M3ratio]) AS diff
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE (([M1ratio]-[M3ratio])) > (.2)

252683: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_mcpgovsnp]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_mcpgovsnp].column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description].column1
WHERE column10 > 10

252693: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_a9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a0854e1e]

19650: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_CDS_int_mCpG_2].ID

26381: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd

252799: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cpgmeth_clusters_100_4_v9_90_closest_mrna.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cpgmeth_clusters_100_4_v9_90_closest_mrna.txt].column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description].column1

51603: SELECT [Protein names],
	HK_CF2,
	HK_CF35,
	HK_CF70,
	V_CF26,
	V_CF34,
	V_CF71,
	Contig
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_sig_normalized_exp]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_clc_wID_info]des ON sig.contig=des.Column1

29755: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__C__'

252881: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_mrna_int_nomcpg_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cds_int_nomcpg] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546tjgr_mrna_int_nomcpg_2].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cds_int_nomcpg].id

29746: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

28970: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

253051: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sigenae_cgigas_all_contigs_1.tab]

41149: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
			WHERE M1_meth > 0.5
					AND M3_meth < 0.5
					AND T1D3_meth > 0.5
					AND T1D5_meth > 0.5
					AND T3D3_meth < 0.5
					AND T3D5_meth < 0.5) ALIAS

29742: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

253075: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_m1.txtec57f]

29744: SELECT COUNT (*)
FROM (
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CA_'

253193: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_outd6914]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_out05f79]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_out8dfa6]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_out75f63]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_out4c9d1]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratch_methratio_outd95d6]

50593: SELECT *,
	[M1ratio]+[T1D5ratio]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

59850: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON sp.CGI_ID=de.baseMean

50626: SELECT *,
	abs(mean1 - mean3) AS meandiff
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) = 0
		AND mean1 = 0

18657: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546 Module 2 Joining Tables].[GO ID]=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim].GO_id

253650: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_expressedgene4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0.txt]

41148: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
			WHERE M1_meth > 0.5
					AND M3_meth = 0
					AND T1D3_meth > 0.5
					AND T1D5_meth > 0.5
					AND T3D3_meth = 0
					AND T3D5_meth = 0) ALIAS

254724: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_hsarray_hyper_genes8babc]

253747: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_t3d5.txt4de83]

26901: SELECT id,
	foldchange,
	pval,
	de.Column3,
	evalue,
	Column13 AS GeneDes
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlkAb_DESeq_SPID]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

20143: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Gil]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Gil].GENEID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gill_meth_CDSexpression_gene].ID

253939: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[dheilly_diffgametogenesis_file_s2]s2
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sig6_blastn_sig9]ss ON s2.genebank=ss.column4

29042: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	C_count AS C_count,
	C_count/CT_count AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_M1_methykit_step1]

254091: SELECT column1,
	column2,
	column3,
	column4,
	column5,
	column6,
	column7,
	column8,
	CASE
					WHEN charindex(';', column9) = 0 THEN column9
					ELSE substring(column9, 4, charindex(';', column9)-4)
	END AS column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_mrna.txt]

254176: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigorna_array_v6]rna
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[gpl11353_array]arr ON rna.sig_no=arr.contigname

19687: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG].ID

19669: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG].ID

19674: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546TJGR_mRNA_int_mCpG_2].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Stats_CDS_int_mCpG].ID

254840: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_ensembl_tsv223cda2]

28869: SELECT Gene,
	max(exons) AS Exon

254446: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d3772dc]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d38b231]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d3de483]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d341a95]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d35fd65]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d335969]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d36bb8e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d315b67]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d377739]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d396d46]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d36b4af]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d3001a7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d375f8c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d335941]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d3f4582]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_t1d3e3fd6]

50583: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] < abs(0.20)
		AND [T1D3ratio]-[mean] < abs(.2)
		AND [T1D5ratio]-[mean] < abs(.2)

41197: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR2]
WHERE M1vM3 <> '-'
		AND M1vT1D3 = '-'
		AND M1vT1D5 = '-'
		AND M3vT3D3 = '-'
		AND M3vT3D5 = '-'
		AND T1D3vT1D5 = '-'
		AND T1D3vT3D3 = '-'
		AND T1D5vT3D5 = '-'

41198: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoLarvae_DMR2]
WHERE M1vM3 <> '-'
		AND M1vT1D3 = '-'
		AND M1vT1D5 = '-'
		AND M3vT3D3 <> '-'
		AND M3vT3D5 <> '-'
		AND T1D3vT1D5 = '-'
		AND T1D3vT3D3 = '-'
		AND T1D5vT3D5 = '-'

50592: SELECT *,
	M1ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci

24077: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 8, CHARINDEX(';', Column9)-2)
	END AS ColumnNew
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

24634: SELECT Chromosome,
	"Chromosome region start" - 1 AS
START, "Chromosome region end",
	'exon' AS Feature,
	"Expression Values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]
ORDER BY "Expression Values" DESC

50668: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci

59629: SELECT SPID,
	basemean AS DiffEx_ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean
WHERE baseMean LIKE 'CGI%'

24069: SELECT Column9,
	CASE
					WHEN CHARINDEX(';', Column9) = 0 THEN Column9
					ELSE SUBSTRING(Column9, 1, CHARINDEX(';', Column9)-1)
	END AS Column9
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_oysterv9_CDS.txt]

50625: SELECT *,
	abs(mean1 - mean3) AS meandiff
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) = 0

50581: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] < abs('0.20')
		AND [T1D3ratio]-[mean] <.2
		AND [T1D5ratio]-[mean] <.2

20105: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	varp(column14),
	stdev(column14),
	min(column14),
	max(Column14),
	avg(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

254992: SELECT gene,
	min(exons) AS numex,
	max(cds_rpkm) AS maxrpkm,
	min(cds_rpkm) AS minrpkm,
	avg(cds_rpkm) AS avgrpkm,
	var(cds_rpkm) AS varrpkm
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill rnaseq clean]
GROUP BY gene

50582: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] < abs(0.20)
		AND [T1D3ratio]-[mean] <.2
		AND [T1D5ratio]-[mean] <.2

27064: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	((cast([Column10]AS float)/(cast([Column12]AS float)))) AS feat_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

26906: SELECT id,
	foldchange,
	pval,
	Column13 AS NCBI_nt_Des
FROM [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAB_DESeq.txt]de
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_nt_blastout_taxa3]lft ON de.id = lft.Column1

255391: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_id_cpg_1.tab]

41145: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > 0.5
		AND M3_meth > 0.5
		AND T1D3_meth > 0.5
		AND T1D5_meth > 0.5
		AND T3D3_meth > 0.5
		AND T3D5_meth > 0.5

255585: SELECT cds.*,
	mrna.column4 AS mrna_start,
	mrna.column5 AS mrna_end
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[snapshot of cds gff] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mrna gff] mrna ON cds.column9 = mrna.column9

54880: SELECT *,
	([M1ratio]-[M3ratio])/2 AS difference
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci

24246: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS New_Start
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC

24356: SELECT seqname,
START, score
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] des ON gff.seqname = des.CGI_ID

24633: SELECT Chromosome,
	"Chromosome region start",
	"Chromosome region end",
	'exon' AS Feature,
	"Expression Values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]
ORDER BY "Expression Values" DESC

25033: SELECT *,
	('EMP'+right('00'+CONVERT([varchar](5),[start]),(5))) AS newcol,
	ROW_NUMBER () OVER (PARTITION BY [start]
																					ORDER BY [end] DESC) AS [new col name]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_Mgo_gene_RNA-seq_IGV]

50579: SELECT *,
	([M1ratio]+[T1D3ratio]+[T1D5ratio])/3 AS mean_chk
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cast_lineage_1]
WHERE [M1ratio]-[mean] <.2
		AND [T1D3ratio]-[mean] <.2
		AND [T1D5ratio]-[mean] <.2

41152: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > .8
		AND M3_meth > .8
		AND T1D3_meth < 0.5
		AND T1D5_meth < 0.5
		AND T3D3_meth < 0.5
		AND T3D5_meth < 0.5

27062: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	((cast([Column10]AS float)/(cast([Column12]AS float))))*10
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

256107: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_gene_genomic_f.txtfc4bd]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_gene_genomic_f.txte5eae]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_gene_genomic_f.txt3c2ee]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_methratio_gene_genomic_f.txtf24c2]

44992: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CG_Ensembl_featurejoin]cg ON m1.M1ID=cg.ChrStart

256210: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill exon rpkm]
WHERE minrpkm > 0
		AND numex > 4

24245: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS PLS
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC

20410: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	avg(Column14),
	stdev(column14),
	min(column14),
	max(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_MgoTophat_coverage_CDS.txt]
GROUP BY Column9

41151: SELECT *
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[commonloci_final_noNAs.csv]
WHERE M1_meth > .8
		AND M3_meth > .8
		AND T1D3_meth = 0
		AND T1D5_meth = 0
		AND T3D3_meth = 0
		AND T3D5_meth = 0

50979: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE '%apoptosis%'

24631: SELECT Chromosome,
	"Chromosome region start",
	"Chromosome region end",
	"Feature ID",
	"Expression Values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]
ORDER BY "Expression Values" DESC

50976: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE 'apoptosis'

20107: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	avg(Column14),
	stdev(column14),
	min(column14),
	max(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

256644: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_te_cgi_b.txt4c791]

20123: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	avg(Column14),
	stdev(column14),
	min(column14),
	max(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

22447: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_QPX_Experiment_UniqueReads_simple.txt] READS
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[QPX_CLC_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_Kal_tab.txt] clc ON READS."Feature ID" = clc."Feature ID"

256846: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_rna-seq_mbdunmeth_g26d0a]

62350: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_cuffdiffgenes.sorted_by_expression.sig.txt]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_rebuilt.gtf.geneIDend]id ON sig.gene_ID=id.Column10

24630: SELECT Chromosome,
	"Chromosome region start",
	"Chromosome region end",
	"Feature ID",
	"Expression Values"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]
ORDER BY "Expression Values"

45008: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CG_Ensembl_featurejoin]cg ON m1.M1ID=cg.ChrStart

29423: SELECT chr AS seqname,
	pos - 1 AS
START,

257102: SELECT column9,
	sum(column14),
	count(column14),
	var(column14),
	avg(column14),
	stdev(column14),
	min(column14),
	max(column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gil_exp_th_coverage_cds.csv]
GROUP BY column9

50980: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE Pathway LIKE 'cell'

24729: SELECT Chromosome AS feature,
	"Chromosome region start" - 1 AS
START, "Chromosome region end" AS [end],
	'gene' AS feature,
	RPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]

24248: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC

25855: SELECT DISTINCT ContigID,
	GOSlim_bin,
	evalue
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_GO]
WHERE aspect LIKE 'P'

24355: SELECT seqname
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_Gene_Genomic_GFF] gff
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)] des ON gff.seqname = des.CGI_ID

22448: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[QPX_Experiment_UniqueReads_simple.txt] READS
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[QPX_CLC_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_Kal_tab.txt] clc ON READS."Feature ID" = clc."Feature ID"

42530: SELECT ProbeName,
	GB_ACC,
	Column7 AS sequence,
	Description
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

47108: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [stdev],

		(SELECT var(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [var],

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) / ((m1ratio + T1D3ratio + T1D5ratio)/3) AS CI
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0

28694: SELECT Gene,
	min(exons) AS NumEx,
	max(cds_rpkm) AS maxRPKM,
	min(cds_rpkm) AS minRPKM,
	avg(cds_rpkm) AS avgRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNAseq clean]
GROUP BY Gene

47106: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [stdev],

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) / ((m1ratio + T1D3ratio + T1D5ratio)/3) AS CI
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0

30045: SELECT *
FROM [16cb3c1f300d170e608871ac9acbb828bdfcc6c157b5d014cf7ef4a14dce7d27].[Oly_Blast_uniprot_swissprot.txt]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID

28824: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	(len(sequence)- len(REPLACE(sequence, 'CG', ' '))) / (((len(sequence)- len(REPLACE(sequence, 'G', ''))) * (len(sequence)- len(REPLACE(sequence, 'C', ''))))) AS pls,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

28635: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5)d

47103: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [Max]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

26051: SELECT COUNT (*)
FROM
		(SELECT PeptideSequence,
				COUNT (*) AS cnt
			FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[pep peak areas all oysters2.txt]
			GROUP BY PeptideSequence
			HAVING COUNT (*) > 1) GO

24975: SELECT CAS001,
	CASE
					WHEN CAS001=2 THEN 'NM'
					WHEN CAS001=1 THEN 'M'
					WHEN CAS001=0 THEN 'U'
	END AS CAS001MethStat
FROM [2040a9a82174fad20bb8a26652bfd4303334aaf5930c4fc9dd7c24556ba787e8].[summed presence absence fragment peaks]

28866: SELECT Gene,
	max(exons) AS Exon

50621: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_1.txt]c1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sq_cglarv_lineage_3.txt]c3 ON c1.loci1=c3.loci3
WHERE abs(mean1 - mean3) <= 0.3

25654: SELECT ["Feature ID"] AS ID
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]

20103: SELECT Column9,
	sum(Column14),
	count(Column14),
	var(column14),
	min(column14),
	max(Column14),
	avg(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

27043: SELECT Column1 AS seqid,
	Column4 AS
START, Column5 AS [end],
	'BiGillExonExp' AS Feature,
	(Column10 / Column12)*1000 AS Cov_bp
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_ThBAM_cov_exon_2.txt]

255178: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_cgigas_gene_fasta3f84b]

51439: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_deseq2_sig_results_c]sig
LEFT JOIN [5160076dcfc565e04663d49f356e6ccbe21da8cdf3280f712474578431530ff9].[Phel_clc_blastx_uniprot_sprot_sqlready_1.tab]bla ON sig.Column1=bla.Column1

24337: SELECT cd.Column9 AS Seq,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	cd.Column6,
	cd.Column7,
	cd.Column6 AS frame,
	cd.Column6 AS COMMENT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

24257: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

27907: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_pro_island1u_intersect_mCpG_mod.txt]
WHERE Column9 = 'CGI_10000009'

50675: SELECT *,
	sperm.mean_sperm-d3.mean_day3 AS 's-3'
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.3
		OR abs(sperm.mean_sperm-d5.mean_day5) > 0.3
		OR abs(d3.mean_day3-d5.mean_day5) > 0.3

29177: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_v9_A.txt]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

28813: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

20039: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 100

28806: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) / len(sequence)- len(REPLACE(sequence, 'C', '')) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

27903: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_pro_island1u_intersect_mCpG_mod.txt]pls
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]z ON pls.Column9 = z.[Feature ID]

28149: SELECT p.Column9 AS GeneID,
	p.Column10 AS CGcount,
	m.Column10 AS mCGcount,
	CASE
					WHEN p.Column10 = '0' THEN m.Column10
					ELSE (m.Column10/p.Column10)
	END AS PerMeth
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_prom_subgene_CGcount.txt]p
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_mCGcount.txt]m ON p.Column9 = m.Column9

24249: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column4

252376: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546tjgr_cds_int_nomcpg_2]

24335: SELECT cd.Column9,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	cd.Column6,
	cd.Column7
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

252579: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_t3d3.txtc512a]

252763: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546tjgr_mrna_int_mcpg_2]

252837: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_snp_rnaseqlibary_sb_bigill.csv]

253408: SELECT *,
	concat (column1,'_', column4) AS chrstart
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cgannot_ensembl_feat]

253295: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[aggco oyster bisulfite mrna and cds] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[tjgr_gene_spid_evalue_description].column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[aggco oyster bisulfite mrna and cds].id

39447: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE foldChange < 0.5

254169: SELECT column9,
	sum(column14),
	count(column14),
	var(column14),
	avg(column14),
	stdev(column14),
	min(column14),
	max(column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mgotophat_coverage_cds.txt]
GROUP BY column9

254342: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_scaffold_length.txt]

254387: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_methratio_cgm3add61]

254453: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_nonred_id.txt]

254457: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_gene_length.txt]

59361: SELECT Column1,
	term,
	GOSlim_bin,
	aspect,
	ProteinName
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Piura_v1_uniprot_sprot_sql.tab]p
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]sp ON p.Column3=sp.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[SPID and GO Numbers]GO ON p.Column3=GO.SPID
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GO_to_GOslim]slim ON GO.GOID=slim.GO_id
WHERE aspect LIKE 'P'

51067: SELECT *
FROM [6802bb2a63d94de80643b8c8a95743f03d29aa2033a93084cb8eaf26f7cecba9].[seastar_clc_uniprot_sprot_2.tab]blast
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]unp ON blast.Column3=unp.Entry
WHERE [Protein names] LIKE '%interle%'

254551: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchblast_outff6e9]

254601: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cpgmeth_clusters_100_4_v9_90_closest_mrna.txt]

254614: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_cgigas_hsarray_hypo_genes33c49]

254619: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigo_lar_joineddata_sums.csv]

254621: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_br_cglarv_day3.txt3d271]

254656: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_m1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_m3]m3 ON m1.m1id=m3.m3id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[cg_ensembl_featurejoin]cg ON m1.m1id=cg.chrstart

254659: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_olymfdeg.txt]

254710: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3m1_m3_cgfeature]
WHERE m1ratio > 0.5
		AND m3ratio > 0.5

255034: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_sperm_methylation_info_gene.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgotophat_coverage_cds_summ_cv] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_sperm_methylation_info_gene.txt].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgotophat_coverage_cds_summ_cv].id

254731: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedcg_mrna.txt] mr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_gene_length.txt] lg ON mr.column1 = lg.gid
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_cgigas_go_goslim] slim ON lg.gid = slim."cgi_id"
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_oyster_gene_exon_number] ex ON lg.gid = ex.cgi_id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qdod_zhang_gil_gene_rna-seq] exp ON lg.gid = exp."feature id"

254764: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_jaketable0caf1]

254787: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_deseq2_outff.tab]

254792: SELECT column1 AS gene_id,
	column3 AS POSITION,
	column5 AS meth_ratio,
	LENGTH,
	goslim_bin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[making pictures]
WHERE LENGTH > 2000

254814: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_ye_mix_22smcg5x1536a]

254833: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchjoin_slim8f0f9]

254916: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_sperm_methylation_info_gene.txt]

254954: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_genesoverlap_msp100to300.csv]

255003: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_scratchpiee19f9]

255046: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_dmr2]

255230: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigill_exonexp_gene.txt]

255476: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__cuffdiffgenes.sorted_by_expression.sig.txt28240]

255275: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_merc_slim9d15f]

255325: SELECT *
FROM [table_go_to_goslim]

255444: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_primer 1 methylation status.csv]

45029: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID

255359: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_oyster_gene_exon_number]

255413: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qdod_zhang_mgo_gene_rna-seq2591d]

255520: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ets_enriched_david_go8a5ee]

255565: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table__blast_sprot0e3d3]

24164: SELECT COUNT (*)
FROM
		(SELECT cds.Column1,
				cds.Column2,
				cds.Column3,
				cds.Column4 - mRNA.Column4 +1 AS START, cds.Column5 - mRNA.Column4 +1 AS [End],
				cds.Column6
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
			LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9) aw

255758: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_ets_nsaf_oystersa7624]

255938: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_bigornaseq_exon_exp_1.txt]

256025: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgo_rnaseq_transcriptd5e36]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mgo_rnaseq_transcript82658]

256143: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final15e62]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final828a3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finalf95fa]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final3e1d3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final4001c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finalda5b3]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final29be7]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final01cee]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finalfa88e]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final217b8]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finald1251]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finaldcf1b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final9dc25]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final1f48c]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final96431]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finaldcf2b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final524ca]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final82da9]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final13820]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final0bef4]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finald3992]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final2568a]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_final7e51b]
UNION ALL
SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_mix54methratio_finalf90ba]

256175: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_te_wubonly_cgi_b.txt7bf98]

256326: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_untitled text 26.txt]

47063: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0.8
		AND T1D3ratio < 0.2
		AND T1D5ratio > 0.8

256604: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_aggco oyster bisulfite mrna and cds.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_etal_supptable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_aggco oyster bisulfite mrna and cds.tab].id=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[zhang_etal_supptable14].geneid

256723: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_rna-seq_mbdmeth_gf7fc0]

256810: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_qpx_clc_a530c507fd893f520b973f7410ca587b02d26954cba99c2857cb9446a9c900d3_kal_tab.txt]

257096: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_rna-seq_bb39dc7a]

256993: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_filt_methratio_cgm1_id6fa45]

257036: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_gil_exp_th_coverage_cds.csv]

257360: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_m3.txt4a64b]

257568: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_allcpg]

257603: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_sqlr_t1d3.txtff975]

257663: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (ct_count AS float) AS ct_count,
	CAST (c_count AS float) AS c_count
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[bigo_lar_m1]
WHERE context LIKE '__cg_'
		AND ct_count >= 5
		AND ratio <> 'na'

257865: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_piura_v1_uniprot_sprot_sql.tab]

257814: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_allcpg]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_gillmbdmcpg] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_allcpg].column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_tjgr_mrna_intersect_gillmbdmcpg].column9

257931: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_phel_uniprot_sprot_sql.tab7d708]

47050: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5

47051: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio = 0
		AND T3D3ratio = 0
		AND T3D5ratio = 0

47059: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0.3
		AND T1D3ratio = 0
		AND T1D5ratio = 0
		AND M3ratio > 0.3
		AND T3D3ratio = 0
		AND T3D5ratio = 0

47060: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio > 0.1
		AND T1D3ratio = 0
		AND T1D5ratio = 0
		AND M3ratio > 0.1
		AND T3D3ratio = 0
		AND T3D5ratio = 0

24400: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, Column4 - mRNA_start + 1 AS newstart,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE Column4 - mRNA_end + 1
	END AS nesxstart,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS [end],
	Column5 - mRNA_start + 1 AS newend,
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

47089: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio >= 0.5
		AND T1D5ratio >= 0.5
		AND M3ratio < 0.5
		AND T3D3ratio < 0.5
		AND T3D5ratio < 0.5

47056: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5
		AND T1D3ratio = 0
		AND T1D5ratio >= 0.5
		AND M3ratio >= 0.5
		AND T3D3ratio = 0
		AND T3D5ratio >= 0.5

47104: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT stdev(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [stdev]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

47061: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio = 1
		AND T1D3ratio = 1
		AND T1D5ratio = 1
		AND M3ratio = 1
		AND T3D3ratio = 1
		AND T3D5ratio = 1

47055: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio = 0
		AND T1D3ratio = 0
		AND T1D5ratio = 0
		AND M3ratio = 0
		AND T3D3ratio = 0
		AND T3D5ratio = 0

47102: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin,

		(SELECT max(v)
			FROM (
									VALUES (M1ratio), (T1D3ratio), (T1D5ratio)) AS value(v)) AS [Max]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

47062: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio = 1
		AND T1D3ratio = 0
		AND T1D5ratio = 1

47049: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'
		AND M1ratio >= 0.5

47048: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

47097: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio,
	((m1ratio + T1D3ratio + T1D5ratio)/3) AS mean_1lin
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

24398: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, Column4 - mRNA_start + 1 AS newstart,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS [end],
	Column5 - mRNA_start + 1 AS newend,
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

50477: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG3x]c
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG3x]m ON c.Column1=m.Column1
WHERE m.Column1 <> ' '

47116: SELECT M1ID,
	M1ratio,
	T1D3ratio,
	T1D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID
WHERE [M1coverage] >= '5'
		AND [M3coverage] >= '5'
		AND [T1D3coverage] >= '5'
		AND [T1D5coverage] >= '5'
		AND [T3D3coverage] >= '5'
		AND [T3D5coverage] >= '5'

24397: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, Column4 - mRNA_start + 1 AS newstart,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS [end],
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

25249: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	ex."Target description",
	ex."GO enrichment",
	ex."GO biological process",
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means" AS CLC400,
	ex.RPKM1 AS SuppRPKM1,
	clc."1000 - Means" AS CLC1000,
	ex.RPKM AS SuppRPKM
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

24396: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, CASE
											WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
											ELSE mRNA_end - Column5 + 1
							END AS [end],
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

28586: SELECT [chr],
	CAST([pos] AS INTEGER) AS [pos],
	[strand],
	[context],
	CAST([ratio] AS FLOAT) AS [ratio],
	CAST([eff_CT_count] AS INTEGER) AS [eff_CT_count],
	CAST([C_count] AS INTEGER) AS [C_count],
	CAST([CT_count] AS INTEGER) AS [CT_count],
	CAST([rev_G_count] AS INTEGER) AS [rev_G_count],
	CAST([CI_lower] AS FLOAT) AS [CI_lower],
	CAST([CI_upper] AS FLOAT) AS [CI_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
WHERE [ratio] <> 'NA'
		AND context LIKE '__CG_'
		AND CT_count >= 5

28821: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	(len(sequence)- len(REPLACE(sequence, 'CG', ' '))) / ((len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', '')))) AS pls,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

28822: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	(len(sequence)- len(REPLACE(sequence, 'CG', ' '))) / ((len(sequence)- len(REPLACE(sequence, 'G', ''))) * (len(sequence)- len(REPLACE(sequence, 'C', '')))) AS pls,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

25244: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means",
	ex.RPKM AS SuppRPKM,
	clc."1000 - Means",
	ex.RPKM1 AS SuppRPKM1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

28820: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	(len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', ''))) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CpGcount,
	(len(sequence)- len(REPLACE(sequence, 'CG', ' '))) / ((len(sequence)- len(REPLACE(sequence, 'G', ''))) + (len(sequence)- len(REPLACE(sequence, 'C', '')))) sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

24339: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, CASE
											WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
											ELSE mRNA_end - Column5 + 1
							END AS [end], cd.Column6 AS score, cd.Column7 AS strand, cd.Column6 AS frame,

28752: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10007702'

29735: SELECT [chr],
	CAST([pos] AS INTEGER) AS [pos],
	[strand],
	[context],
	CAST([ratio] AS FLOAT) AS [ratio],
	CAST([eff_CT_count] AS INTEGER) AS [eff_CT_count],
	CAST([C_count] AS INTEGER) AS [C_count],
	CAST([CT_count] AS INTEGER) AS [CT_count],
	CAST([rev_G_count] AS INTEGER) AS [rev_G_count],
	CAST([CI_lower] AS FLOAT) AS [CI_lower],
	CAST([CI_upper] AS FLOAT) AS [CI_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_methratio_A.txt]
WHERE [ratio] <> 'NA'

24340: SELECT cd.Column9 AS seqname,
	cd.Column2 AS SOURCE,
	cd.Column3 AS feature,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS
START, CASE
											WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
											ELSE mRNA_end - Column5 + 1
							END AS [end],
	cd.Column6 AS score,
	cd.Column7 AS strand,
	cd.Column6 AS frame,
	cd.Column6 AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

45030: SELECT M1ID,
	M1ratio,
	M3ratio,
	T1D3ratio,
	T1D5ratio,
	T3D3ratio,
	T3D5ratio
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M1]m1
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_M3]m3 ON m1.M1ID=m3.M3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D3]t1d3 ON m1.M1ID=t1d3.T1D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T1D5]t1d5 ON m1.M1ID=t1d5.T1D5ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D3]t3d3 ON m1.M1ID=t3d3.T3D3ID
JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt3_T3D5]t3d5 ON m1.M1ID=t3d5.T3D5ID

50678: SELECT *,
	sperm.mean_sperm-d3.mean_day3 AS 's-3',
	sperm.mean_sperm-d5.mean_day5 AS 's-5',
	d3.mean_day3-d5.mean_day5 AS '3-5'
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.4
		OR abs(sperm.mean_sperm-d5.mean_day5) > 0.4
		OR abs(d3.mean_day3-d5.mean_day5) > 0.4

28584: SELECT [chr],
	CAST([pos] AS INTEGER) AS [pos],
	[strand],
	[context],
	CAST([ratio] AS FLOAT) AS [ratio],
	CAST([eff_CT_count] AS INTEGER) AS [eff_CT_count],
	CAST([C_count] AS INTEGER) AS [C_count],
	CAST([CT_count] AS INTEGER) AS [CT_count],
	CAST([rev_G_count] AS INTEGER) AS [rev_G_count],
	CAST([CI_lower] AS FLOAT) AS [CI_lower],
	CAST([CI_upper] AS FLOAT) AS [CI_upper]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
WHERE [ratio] <> 'NA'

25243: SELECT clc."Feature ID" AS CLCID,
	ex."Feature ID" AS SuppID,
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value" AS CLCp,
	ex."P-value" AS SuppP,
	clc."Experiment - Fold Change (original values)" AS CLCfold,
	ex."Fold Change (original values)" AS SuppFold,
	clc."400 - Means",
	clc."1000 - Means"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

50602: SELECT *,
	([M1ratio]+[T1D5ratio]+[T1D5ratio])/3 AS mean1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_M1.txt]m1
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D5.txt]t1d5 ON m1.loci=t1d5.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[sqlr_T1D3.txt]t1d3 ON m1.loci=t1d3.loci
WHERE [M1ratio]-(([M1ratio]+[T1D3ratio]+[T1D5ratio])/3) < abs(.2)
		AND [T1D3ratio]-(([M1ratio]+[T1D3ratio]+[T1D5ratio])/3) < abs(.2)
		AND [T1D5ratio]-(([M1ratio]+[T1D3ratio]+[T1D5ratio])/3) < abs(.2)

24336: SELECT cd.Column9,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	cd.Column6,
	cd.Column7,
	cd.Column6 AS frame,
	cd.Column6 AS COMMENT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

24322: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size

19914: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_mRNA_intersect_mCpGovSNP].Column9=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column10 > 10

20048: SELECT ID,
	"Ratio mCDS/mIntron",
	CDScount,
	"Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA",
	Mgo
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE "Sum mRNA" > 50

29207: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_T3D3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29206: SELECT chr + '_' + (CAST (pos AS varchar)) AS chr_start,
	chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M3]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

25241: SELECT clc."Feature ID",
	ex."Feature ID",
	clc."Baggerley's 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08: 1000 vs 400 original values - P-value",
	ex."P-value",
	clc."Experiment - Fold Change (original values)",
	ex."Fold Change (original values)",
	clc."400 - Means",
	clc."1000 - Means"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

24333: SELECT cd.Column9,
	cd.Column2,
	cd.Column3,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	cd.Column8
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

20045: SELECT ID,
	"Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA",
	Mgo
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 0
		AND "Sum mRNA" > 50

50674: SELECT *,
	sperm.mean_sperm-d3.mean_day3 AS 9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.3
		OR abs(sperm.mean_sperm-d5.mean_day5) > 0.3
		OR abs(d3.mean_day3-d5.mean_day5) > 0.3

20043: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)",
	"Percent mCpG (Intron)",
	swissprot,
	"Sum mRNA"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 0
		AND "Sum mRNA" > 50

24255: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End,
	Column5 - Column4 AS exon_size
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

29185: SELECT chr AS chr,
	pos AS
START, chr + '_' AS chr_start,
	'+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29184: SELECT chr AS chr,
	pos AS
START, chr,
	'_' AS chr_start,
	'+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29181: SELECT chr AS chr,
	pos AS
START, chr + '_' AS t,
	'+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

29178: SELECT chr AS chr,
	pos AS
START, '+' AS strand,
	CAST (CT_count AS float) AS CT_count,
	CAST (C_count AS float) AS C_count,
	CAST (C_count AS float) / CAST (CT_count AS float) AS freqC,
	1 - (CAST (C_count AS float) / CAST (CT_count AS float)) AS freqT
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_M1]
WHERE context LIKE '__CG_'
		AND CT_Count >= 5
		AND ratio <> 'NA'

20036: SELECT "Percent mCpG (mRNA)",
	"Percent mCpG (CDS)"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_AggCo Oyster Bisulfite mRNA and CDS.tab].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Zhang_etal_SuppTable14].GeneID
WHERE Mgo > 100

28805: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS Ccount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS Gcount,
	len(sequence)- len(REPLACE(sequence, 'G', '')) * len(sequence)- len(REPLACE(sequence, 'C', '')) AS C_Gcount,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CGcount,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

50673: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_sperm.txt]sperm
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day3.txt]d3 ON sperm.loci=d3.loci
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[br_cglarv_day5.txt]d5 ON sperm.loci=d5.loci
WHERE abs(sperm.mean_sperm-d3.mean_day3) > 0.3
		OR abs(sperm.mean_sperm-d5.mean_day5) > 0.3
		OR abs(d3.mean_day3-d5.mean_day5) > 0.3

24253: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4 + 1
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 + 1
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

24252: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5 +1
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

39414: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_tab]fa
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_CLC_count]clc ON fa.contigID=clc."Feature ID"
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[BlackAB_DESeq_fold_pvalue.csv]de ON fa.contigID=de.id
LEFT JOIN [6544cbe0224ca5ec3fe1c24c8a622a3cd4d92e32df4abd9495d5fbd106faae85].[lft_BlackAbalone_sp_go_path.csv]sp ON fa.contigID=sp.ContigID

29424: SELECT chr AS seqname,
	pos - 1 AS
START,

24250: SELECT *,
	CASE
					WHEN Column7 = '+' THEN Column4 - mRNA_start + 1
					ELSE mRNA_end - Column4
	END AS New_Start,
	CASE
					WHEN Column7 = '+' THEN Column5 - mRNA_start + 1
					ELSE mRNA_end - Column5
	END AS New_End
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CDS GFF with Gene start and stop] cd
ORDER BY Column1 DESC,
	Column9

19926: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column15 < 100

19924: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1
WHERE Column15 = 0

19917: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1

54879: SELECT *,
	([M1ratio]+[M3ratio])/2 AS meanmales
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE [M1ratio]-(([M1ratio]+[M3ratio])/2) > abs(.2)
		OR [M3ratio] - (([M1ratio]+[M3ratio])/2) > abs(.2)

19921: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1

20454: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Sperm_Methylation_info_gene.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_coverage_CDS_summ_cv] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Sperm_Methylation_info_gene.txt].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_MgoTophat_coverage_CDS_summ_cv].ID

19927: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_GO_bigfile] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CpGMeth_clusters_100_4_v9_90_closest_mRNA.txt].Column13=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_GO_bigfile].Column1

24352: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_gene_genomic_F.txt] bg
WHERE context LIKE '__CG_'

28798: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS C,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS G,
	(len(sequence)- len(REPLACE(sequence, 'CG', '')))/2 AS CG,
	len(sequence)- len(REPLACE(sequence, 'CG', ' ')) AS CG,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

28797: SELECT CGI_ID,
	len(sequence)- len(REPLACE(sequence, 'C', '')) AS C,
	len(sequence)- len(REPLACE(sequence, 'G', '')) AS G,
	(len(sequence)- len(REPLACE(sequence, 'CG', '')))/2 AS CG,
	len(sequence)- len(REPLACE(sequence, 'CG', '')) AS CG,
	sequence
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Cgigas_gene_fasta]

18564: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

18575: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

18688: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_fish546_module1_blast_table.txt].SPID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_associations_uni_swisspro_012410.tabular].ID

24404: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_methratio_gene_genomic_F.txt] bg
WHERE context LIKE '__CG_'

24412: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGill_methratio_v9_A.txt] yel
WHERE context LIKE '__CG_'

25237: SELECT clc."Feature ID",
	clc."Experiment - Fold Change (original values)",
	clc."400 - Means",
	clc."1000 - Means"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

23721: SELECT Column1, Column3, LENGTH, (round(Column3 / LENGTH,3)),Column5
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt]
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[meth_combinedCG_mRNA.txt].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_gene_length].gID

19706: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TJGR_Gene_SPID_evalue_Description].Column1=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS].ID

28498: SELECT chr AS seqname,
	'methratio' AS SOURCE,
	'CpG' AS feature,
	pos AS
START, pos + 1 AS [end],
	ratio AS score,
	strand,
	'.' AS frame,
	'.' AS attribute
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001]. [BiGo_lar_M3] m3
WHERE context LIKE '__CG_'

20132: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gill_percentMeth_gene.txt]
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt] ON [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt].ID=[d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_cov_CDS_4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_cv.txt].ID

54888: SELECT *,
	([M1ratio]-[M3ratio]) AS diff
FROM [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt]
INNER JOIN [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt] ON [a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M1.txt].loci=[a03fb4cde8db6dd7b0ef424e41976a2dd7db20bec9fca94f1ecf1c8e1fa0a396].[M3.txt].loci
WHERE (([M1ratio]-[M3ratio])) > (.2)
		OR (([M1ratio]-[M3ratio])) < (-.2)

24162: SELECT cds.Column1,
	cds.Column2,
	cds.Column3,
	cds.Column4 - mRNA.Column4 +1 AS
START, cds.Column5 - mRNA.Column4 +1 AS [End]
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

25228: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_CLC_Ruphi_400_1000.csv]clc
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_Ruphi_RNAseq_supp.csv]ex ON clc.[Feature ID] = ex.[Feature ID]

50826: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]dml
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join ]s19 ON dml.gene_ID=s19.Column2

50827: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]dml
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join]s19 ON dml.gene_ID=s19.Column2

69355: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column1=up.Entry

26047: SELECT COUNT (*)
FROM
		(SELECT PeptideSequence,
				count(*) AS cnt
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
			GROUP BY [PeptideSequence]
			HAVING COUNT (*) > 1) GO

50467: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_mix_22smCG5x]m
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[filt_YE_control_22smCG5x]c ON m.scaffm=c.scaffc
WHERE scaffc <> ' '

69361: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column1=up.Entry

69362: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OlyO transcriptome v3 swiss-prot Blast]oly
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]up ON oly.Column3=up.Entry

35788: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[fish546_DEgene_out]deg
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON deg.gene_name = sp.CGI_ID

28249: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_OA_enrich445C9]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON g.Genes = sp.CGI_ID

27901: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[ExpressedGene_meth4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0]g
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON g.ID = sp.CGI_ID

28151: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_prom_subgene_PerMeth.txt]pr
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_RNAseq_genes]exp ON pr.GeneID = exp.["Feature ID"]

54956: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON b.ID = sp.SPID

29242: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_lar_nonred_ID split]id
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGo_lar_M1_hack]M1 ON id.[chr]=M1.[chr]
AND id.[start]=M1.[start]

24158: SELECT mRNA.Column1
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_CDS GFF] cds
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[oyster_v9_mRNA GFF] mRNA ON cds.Column9 = mRNA.Column9

59203: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_uniprot_sprot_sql.tab]phel
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[uniprot-reviewed_wGO_010714]des ON phel.Column3=des.Entry

30098: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[scratchblast_out]blast
LEFT JOIN [17e77afa72d104f441e97154178070bed38839d5de8487075183ae9b426553df].[UniprotProtNamesReviewed_yes20130610]unp ON blast.Column3 = unp.SPID

59627: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas-DEGlist-sql]de ON sp.CGI_ID=de.baseMean

54953: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[TE_WUBonly_CGI_b.txt]b
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON b.ID=sp.SPID

39434: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE [Gene ontology (GO)] LIKE '%immune%'
		OR [Gene ontology (GO)] LIKE '%glycolysis%'

25341: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '%gigas'
		OR Organism LIKE '%oyst%'
		AND "Designed By" LIKE 'Brad%'

28649: SELECT COUNT (*)
FROM
		(SELECT DISTINCT (["Gene name"])
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGill_RNAseq_exon]
			WHERE ["Transcripts annotated"] > 5) ALIAS

50829: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_DiffGametogenesis_File_S2]s2
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Sig6_blastn_Sig9]ss ON s2.Genebank=ss.Column4

28726: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill_var.csv]b
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD Cgigas Gene Descriptions (Swiss-prot)]sp ON b.Gene=sp.CGI_ID

28857: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGill RNaEXON min 4]ps
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_bigill percent methtxt]m ON ps.Gene = m.ID

51599: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_sig_normalized_exp]sig
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Phel_clc_wID_info]des ON sig.contig=des.Column1

28980: SELECT chr AS chr,
START AS
START, strand AS strand,
	CT_count AS CT_count,
	freqC AS freqC
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_T3D3_methylkit_s2]

42522: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
INNER JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

42523: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[GPL11353_array]ar
RIGHT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cgigas_EST_NCBI_040414_cl]est ON ar.GB_ACC=est.Column5

28714: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM > 50000

20073: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (CDS)" > 80
		AND "Percent mCpG (Intron)" < 20

20023: SELECT Column4
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (CDS)" > 80
		AND "Percent mCpG (Intron)" < 20

69501: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join]d
LEFT JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]s ON d.Column1=s.Column1

69502: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Dheilly_S1_v9_join]d
FULL JOIN [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Cg_Sigenae6_transcriptome]s ON d.Column1=s.Column1

20032: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 20
		AND "Percent mCpG (Intron)" > 80
		AND "Percent mCpG (CDS)" < 20

28707: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM < 100

28708: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM < 200

28709: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM >500

20028: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (Intron)" > 80
		AND "Percent mCpG (CDS)" < 20

20029: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (Intron)" > 70
		AND "Percent mCpG (CDS)" < 30

26034: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) = 1

28715: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM > 50000

26043: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) = 1

28725: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM > 10
		AND NumEx >5
		AND NumEx <20
		AND varRPKM < 200

19699: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Percent mCpG (CDS)" > 90

26262: SELECT PeptideSequence,
	count(*) AS cnt
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[OAMS_Skyline_p2_c_]
GROUP BY [PeptideSequence]
HAVING COUNT (*) > 2

43716: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

39441: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[lft_BlackAbalone_v3_genehunt]
WHERE pval < .05
		AND [Gene ontology (GO)] LIKE '%immune%'

19702: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[AggCo Oyster Bisulfite mRNA and CDS]
WHERE "SUM mRNA" > 100
		AND "Ratio mCDS/mIntron" >2

24626: SELECT *,
	Chromosome,
	"Chromosome region start",
	"Chromosome region end"
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Mgo_RNAseq_transcript]

20100: SELECT Column9,
	sum(Column14),
	count(Column14)
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[table_TJGR_Gil_Exp_TH_coverage_CDS.csv]
GROUP BY Column9

25342: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE "Organism" LIKE '%gigas'
		AND "Designed By" LIKE 'Brad%'

25657: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[solid0078_20091105_RobertsLab_GE_F3 trimmed RNA-Seq.txt]
WHERE UniqueReads > 10

28601: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio >= 0.5
					AND ratio < 0.75)m3

28600: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio >= 0.25
					AND ratio < 0.5)m3

20159: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 50
		AND Gil >10
		AND CG >10
		AND CDScount >3

28597: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio > 0
					AND ratio < 0.25)m3

28604: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio >= 0
					AND ratio <=1)m3

28701: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_Bigill exon rpkm]
WHERE avgRPKM >5
		AND NumEx >5
		AND NumEx <20

28605: SELECT COUNT (*)
FROM
		(SELECT *
			FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[_BiGoM3cg5]
			WHERE ratio > 0
					AND ratio <=1)m3

20075: SELECT Column2
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (mRNA)" < 80

43715: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGo_mito_cleam]
WHERE context LIKE '__CG_'

19720: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "SUM mRNA" > 100
		AND "Ratio mCDS/mIntron" > 3

27910: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[qDOD_Zhang_Gil_gene_RNA-seq]
WHERE [Feature ID] = 'CGI_10003231'

25323: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[RobertsLab_PrimerDatabase]
WHERE Organism LIKE '_gig_'

20062: SELECT Column21
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[CpGMeth_clusters_100_4_v9_90_closest_mRNA gene]
WHERE Column15 < 100

20027: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (mRNA)" > 90

20024: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 100
		AND "Percent mCpG (mRNA)" > 80

20079: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (mRNA)" < 20

20189: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth > 20
		AND CG >10
		AND CDScount = 10

50875: SELECT *
FROM [37236ed22adbc74229335ace5c0ee131413db24ebeb31ef01a7b623edb468d8a].[DMRvisAnnotated_CGI4b5af442229cf356a6868a3b8791ffaa70e0135ef8af2eb4898bddbeb0e0b0b0_TJGRGeneSPID_1.csv]
WHERE Fgo / Mgo > 2

20164: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[Gill_Done_2]
WHERE Percent_Meth < 20
		AND CG >10
		AND CDScount >3

28748: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BiGoRNAseq_exon_exp_1]
WHERE ["Gene name"] LIKE 'CGI_10006796'

20078: SELECT *
FROM [d5985b8912f76c4f6799bacee201e32aba552007bf1c09eeaa03038d03a84001].[BSoysterGENE]
WHERE "Sum mRNA" > 50
		AND "Percent mCpG (mRNA)" > 80