filtered_108A_Female_Mix_GGCTAC_L004_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	filtered_108A_Female_Mix_GGCTAC_L004_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45936627
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC	168464	0.3667313231334987	TruSeq Adapter, Index 11 (100% over 50bp)
CCCTGATTCAACATCGAGGTGCCAATCCCACTAGCCAATACGTTCTCTAC	91079	0.19827097884222103	No Hit
CGCCTACTGAGTAATACTAACCTCTGTGTATAAAAAAACTTTCAGGTGTA	60806	0.13236931827841866	No Hit
CCGACATTGTCGATCATAGGAGAAGTTACGCCGGGGATAACAGGCTAATC	50588	0.11012563025143314	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGCTAC	34890	46.956203	33
TATGCCG	33170	46.48292	46
TCACGGC	35995	46.34892	30
GCACACG	39480	45.822735	11
CACGGCT	36840	45.267456	31
ACGGCTA	36790	44.701595	32
CGTATGC	35020	43.947735	44
CACACGT	40840	43.2774	12
GTCACGG	39150	42.782234	29
CACGTCT	41405	42.55955	14
GATCGGA	42940	42.122795	1
ACACGTC	42900	41.2319	13
AGAGCAC	45040	40.54672	8
CGGAAGA	44885	40.405476	4
AGTCACG	42225	40.31	28
AGCACAC	45230	40.306774	10
TCGGAAG	46035	39.40371	3
TGCCGTC	37290	39.05799	48
CATCTCG	37530	38.96263	39
GTATGCC	39615	38.955902	45