BSMAP v2.74
Start at:  Mon Nov  6 09:32:08 2017

Input reference file: genomes/soap_bgi_01.fa 	(format: FASTA)
Load in 765755 db seqs, total size 776306190 bp. 14 secs passed
total_kmers: 43046721
Create seed table. 35 secs passed
max number of mismatches: read_length * 8% 	max gap size: 0
kmer cut-off ratio: 5e-07
max multi-hits: 100	max Ns: 5	seed size: 16	index interval: 4
quality cutoff: 0	base quality char: '!'
min fragment size:28	max fragemt size:500
start from read #1	end at read #4294967295
additional alignment: T in reads => C in reference
mapping strand: ++,-+
Single-end alignment(8 threads)
Input read file: zr_1-sub001.fastq 	(format: FASTQ)
Output file: analyses/bsmap_out_soap_bgi_01.sam	 (format: SAM)
Thread #7: 	150000 reads finished. 3144 secs passed
Thread #1: 	300000 reads finished. 3144 secs passed
Thread #4: 	50000 reads finished. 3173 secs passed
Thread #6: 	250000 reads finished. 3173 secs passed
Thread #3: 	350000 reads finished. 3176 secs passed
Thread #5: 	400000 reads finished. 3178 secs passed
Thread #2: 	100000 reads finished. 3184 secs passed
Thread #0: 	200000 reads finished. 3216 secs passed
Thread #2: 	725000 reads finished. 4539 secs passed
Thread #1: 	500000 reads finished. 5642 secs passed
Thread #7: 	450000 reads finished. 5647 secs passed
Thread #6: 	600000 reads finished. 5675 secs passed
Thread #3: 	650000 reads finished. 5677 secs passed
Thread #5: 	700000 reads finished. 5677 secs passed
Thread #4: 	550000 reads finished. 5678 secs passed
Total number of aligned reads: 22609 (3.1%)
Done.
Finished at Mon Nov  6 11:06:46 2017
Total time consumed:  5678 secs