BSMAP v2.74
Start at:  Sat Nov  4 13:16:19 2017

Input reference file: genomes/platanus_sb_02.fa 	(format: FASTA)
Load in 12395459 db seqs, total size 1633553496 bp. 63 secs passed
total_kmers: 43046721
Create seed table. 116 secs passed
max number of mismatches: read_length * 8% 	max gap size: 0
kmer cut-off ratio: 5e-07
max multi-hits: 100	max Ns: 5	seed size: 16	index interval: 4
quality cutoff: 0	base quality char: '!'
min fragment size:28	max fragemt size:500
start from read #1	end at read #4294967295
additional alignment: T in reads => C in reference
mapping strand: ++,-+
Single-end alignment(8 threads)
Input read file: zr_1-sub001.fastq 	(format: FASTQ)
Output file: analyses/bsmap_out_platanus_sb_02.sam	 (format: SAM)
Thread #6: 	350000 reads finished. 49251 secs passed
Thread #0: 	400000 reads finished. 49274 secs passed
Thread #3: 	50000 reads finished. 49330 secs passed
Thread #7: 	200000 reads finished. 49442 secs passed
Thread #1: 	300000 reads finished. 49443 secs passed
Thread #2: 	100000 reads finished. 49500 secs passed
Thread #5: 	250000 reads finished. 49520 secs passed
Thread #4: 	150000 reads finished. 49636 secs passed
Thread #5: 	725000 reads finished. 71103 secs passed
Thread #0: 	500000 reads finished. 89006 secs passed
Thread #6: 	450000 reads finished. 89060 secs passed
Thread #1: 	650000 reads finished. 89159 secs passed
Thread #3: 	550000 reads finished. 89183 secs passed
Thread #2: 	700000 reads finished. 89228 secs passed
Thread #7: 	600000 reads finished. 89232 secs passed
Total number of aligned reads: 23060 (3.2%)
Done.
Finished at Sun Nov  5 13:03:32 2017
Total time consumed:  89233 secs