[2017-09-18 09:06:19,763] multiqc [DEBUG ] No MultiQC config found: /Users/sr320/anaconda/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2017-09-18 09:06:19,764] multiqc [DEBUG ] No MultiQC config found: /Users/sr320/.multiqc_config.yaml
[2017-09-18 09:06:19,764] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2017-09-18 09:06:19,764] multiqc [DEBUG ] Command used: /Users/sr320/anaconda/bin/multiqc /Volumes/Alanine/wd/17-09-15/
[2017-09-18 09:06:19,764] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2017-09-18 09:06:19,764] multiqc [INFO ] This is MultiQC v1.0.dev0
[2017-09-18 09:06:19,764] multiqc [DEBUG ] Command : /Users/sr320/anaconda/bin/multiqc /Volumes/Alanine/wd/17-09-15/
[2017-09-18 09:06:19,764] multiqc [DEBUG ] Working dir : /Users/sr320/git-repos/nb-2017/P_generosa
[2017-09-18 09:06:19,764] multiqc [INFO ] Template : default
[2017-09-18 09:06:19,764] multiqc [INFO ] Searching '/Volumes/Alanine/wd/17-09-15/'
[2017-09-18 09:06:19,764] multiqc [DEBUG ] Analysing modules: custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2017-09-18 09:06:19,765] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK
[2017-09-18 09:06:19,768] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /Volumes/Alanine/wd/17-09-15/multiqc_data
[2017-09-18 09:06:19,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: .DS_Store
[2017-09-18 09:06:19,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NR005.sam
[2017-09-18 09:06:19,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NR006.sam
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NR012.sam
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NR019.sam
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NR021.sam
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as too large: Panopea_generosa-Scaff-10k.bowtie-index.1.bt2
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as too large: Panopea_generosa-Scaff-10k.bowtie-index.2.bt2
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as too large: Panopea_generosa-Scaff-10k.bowtie-index.4.bt2
[2017-09-18 09:06:19,784] multiqc [DEBUG ] Ignoring file as too large: Panopea_generosa-Scaff-10k.bowtie-index.rev.1.bt2
[2017-09-18 09:06:19,785] multiqc [DEBUG ] Ignoring file as too large: Panopea_generosa-Scaff-10k.bowtie-index.rev.2.bt2
[2017-09-18 09:06:19,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: .DS_Store
[2017-09-18 09:06:20,149] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found
[2017-09-18 09:06:20,240] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:20,264] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:20,266] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2017-09-18 09:06:20,396] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:22,658] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:22,680] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:24,003] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:24,031] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:24,079] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:24,397] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:24,708] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:25,021] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:25,325] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:25,348] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:28,499] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:28,523] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:28,868] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:29,831] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:30,136] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:30,251] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:30,275] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:30,321] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:30,623] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:32,506] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2017-09-18 09:06:32,550] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:32,573] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:32,870] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:33,168] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:33,465] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:33,766] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:34,062] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:34,085] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:06:44,480] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-1_S3_L001_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-1_S3_L001_R1_001'
[2017-09-18 09:06:44,481] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-1_S3_L001_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-1_S3_L001_R2_001'
[2017-09-18 09:06:44,481] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-2_S11_L002_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-2_S11_L002_R1_001'
[2017-09-18 09:06:44,481] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-2_S11_L002_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-2_S11_L002_R2_001'
[2017-09-18 09:06:44,481] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-3_S19_L003_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-3_S19_L003_R1_001'
[2017-09-18 09:06:44,482] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-3_S19_L003_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-3_S19_L003_R2_001'
[2017-09-18 09:06:44,482] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-4_S27_L004_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-4_S27_L004_R1_001'
[2017-09-18 09:06:44,482] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-4_S27_L004_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-4_S27_L004_R2_001'
[2017-09-18 09:06:44,483] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-5_S35_L005_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-5_S35_L005_R1_001'
[2017-09-18 09:06:44,483] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-5_S35_L005_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-5_S35_L005_R2_001'
[2017-09-18 09:06:44,483] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-7_S51_L007_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-7_S51_L007_R1_001'
[2017-09-18 09:06:44,483] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-7_S51_L007_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-7_S51_L007_R2_001'
[2017-09-18 09:06:44,483] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-8_S59_L008_R1_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-8_S59_L008_R1_001'
[2017-09-18 09:06:44,484] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-ctenidia-RNA-8_S59_L008_R2_001_fastqc.zip' as already parsed 'Geoduck-ctenidia-RNA-8_S59_L008_R2_001'
[2017-09-18 09:06:44,484] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-1_S1_L001_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-1_S1_L001_R1_001'
[2017-09-18 09:06:44,484] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-1_S1_L001_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-1_S1_L001_R2_001'
[2017-09-18 09:06:44,484] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-2_S9_L002_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-2_S9_L002_R1_001'
[2017-09-18 09:06:44,485] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-2_S9_L002_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-2_S9_L002_R2_001'
[2017-09-18 09:06:44,485] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-3_S17_L003_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-3_S17_L003_R1_001'
[2017-09-18 09:06:44,485] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-3_S17_L003_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-3_S17_L003_R2_001'
[2017-09-18 09:06:44,485] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-4_S25_L004_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-4_S25_L004_R1_001'
[2017-09-18 09:06:44,486] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-4_S25_L004_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-4_S25_L004_R2_001'
[2017-09-18 09:06:44,486] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-5_S33_L005_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-5_S33_L005_R1_001'
[2017-09-18 09:06:44,486] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-5_S33_L005_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-5_S33_L005_R2_001'
[2017-09-18 09:06:44,486] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-6_S41_L006_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-6_S41_L006_R1_001'
[2017-09-18 09:06:44,486] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-6_S41_L006_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-6_S41_L006_R2_001'
[2017-09-18 09:06:44,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-7_S49_L007_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-7_S49_L007_R1_001'
[2017-09-18 09:06:44,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-7_S49_L007_R2_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-7_S49_L007_R2_001'
[2017-09-18 09:06:44,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-gonad-RNA-8_S57_L008_R1_001_fastqc.zip' as already parsed 'Geoduck-gonad-RNA-8_S57_L008_R1_001'
[2017-09-18 09:06:44,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-1_S2_L001_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-1_S2_L001_R1_001'
[2017-09-18 09:06:44,487] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-1_S2_L001_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-1_S2_L001_R2_001'
[2017-09-18 09:06:44,488] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-2_S10_L002_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-2_S10_L002_R1_001'
[2017-09-18 09:06:44,488] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-2_S10_L002_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-2_S10_L002_R2_001'
[2017-09-18 09:06:44,488] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-3_S18_L003_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-3_S18_L003_R1_001'
[2017-09-18 09:06:44,488] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-3_S18_L003_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-3_S18_L003_R2_001'
[2017-09-18 09:06:44,488] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-4_S26_L004_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-4_S26_L004_R1_001'
[2017-09-18 09:06:44,489] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-4_S26_L004_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-4_S26_L004_R2_001'
[2017-09-18 09:06:44,489] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-5_S34_L005_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-5_S34_L005_R1_001'
[2017-09-18 09:06:44,489] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-5_S34_L005_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-5_S34_L005_R2_001'
[2017-09-18 09:06:44,490] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-6_S42_L006_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-6_S42_L006_R1_001'
[2017-09-18 09:06:44,490] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-6_S42_L006_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-6_S42_L006_R2_001'
[2017-09-18 09:06:44,490] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-8_S58_L008_R1_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-8_S58_L008_R1_001'
[2017-09-18 09:06:44,490] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-heart-RNA-8_S58_L008_R2_001_fastqc.zip' as already parsed 'Geoduck-heart-RNA-8_S58_L008_R2_001'
[2017-09-18 09:06:44,491] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001'
[2017-09-18 09:06:44,491] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R2_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R2_001'
[2017-09-18 09:06:44,491] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001'
[2017-09-18 09:06:44,491] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R2_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R2_001'
[2017-09-18 09:06:44,491] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001'
[2017-09-18 09:06:44,492] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R2_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R2_001'
[2017-09-18 09:06:44,492] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001'
[2017-09-18 09:06:44,492] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R2_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R2_001'
[2017-09-18 09:06:44,492] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001_fastqc.zip' as already parsed 'Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001'
[2017-09-18 09:06:44,493] multiqc.modules.fastqc.fastqc [INFO ] Found 128 reports
[2017-09-18 09:07:08,175] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/Volumes/Alanine/wd/17-09-15/',)
[2017-09-18 09:07:08,184] multiqc [INFO ] Report : multiqc_report.html
[2017-09-18 09:07:08,185] multiqc [INFO ] Data : multiqc_data
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,185] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/multiqc_fastqc.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/multiqc_general_stats.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,186] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpvzgEYK/multiqc_data/multiqc_sources.txt' to '/Users/sr320/git-repos/nb-2017/P_generosa/multiqc_data'
[2017-09-18 09:07:08,441] multiqc [INFO ] MultiQC complete