Basic Statistics
Measure | Value |
---|---|
Filename | Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60799145 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-151 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 341219 | 0.5612233527297135 | Illumina Single End PCR Primer 1 (100% over 50bp) |
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT | 171946 | 0.2828098980668231 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 71705 | 0.0 | 69.3892 | 1 |
GAGCGTC | 77705 | 0.0 | 64.19223 | 9 |
AGAGCGT | 83570 | 0.0 | 59.736343 | 8 |
AAGAGCG | 92525 | 0.0 | 53.932533 | 7 |
CGGAAGA | 95805 | 0.0 | 52.12533 | 4 |
ATCGGAA | 97255 | 0.0 | 51.34539 | 2 |
TCGGAAG | 102085 | 0.0 | 48.96093 | 3 |
GAAGAGC | 115280 | 0.0 | 43.46004 | 6 |
GGAAGAG | 155850 | 0.0 | 32.43729 | 5 |
AGCGTCG | 80805 | 0.0 | 31.072838 | 9 |
CGCCGTA | 69625 | 0.0 | 21.760262 | 45-49 |
GTCGCCG | 72690 | 0.0 | 20.744116 | 40-44 |
GGTCGCC | 74145 | 0.0 | 20.4759 | 40-44 |
TGGTCGC | 76525 | 0.0 | 19.896488 | 40-44 |
GATCTCG | 76270 | 0.0 | 19.79347 | 30-34 |
CTCGGTG | 76990 | 0.0 | 19.741697 | 35-39 |
GCGTCGT | 77675 | 0.0 | 19.412516 | 10-14 |
TCTCGGT | 78815 | 0.0 | 19.286308 | 35-39 |
GCCGTAT | 80025 | 0.0 | 19.08845 | 45-49 |
GTAGGGA | 80195 | 0.0 | 18.87993 | 15-19 |