@ Thu Mar 16 21:10:03 2017: reading reference /Users/sr320/git-repos/nb-2017/C_virginica/data/GCA_002022765.1_C_virginica_1.0_genomic.fna ...
@ Thu Mar 16 21:10:36 2017: reading /Volumes/Alanine/wd/17-03-16c/bsmap_out_HB30_Oil_25000ppm_TGACCA.sam ...
[samopen] SAM header is present: 358 sequences.
@ Thu Mar 16 21:11:39 2017: combining CpG methylation from both strands ...
@ Thu Mar 16 21:12:40 2017: writing /Volumes/Alanine/wd/17-03-16c/methratio_out_HB30_Oil_25000ppm_TGACCA.txt ...
@ Thu Mar 16 21:16:47 2017: done.