BSMAP v2.74 Start at: Thu Mar 16 13:58:31 2017 Input reference file: /Users/sr320/git-repos/nb-2017/C_virginica/data/GCA_002022765.1_C_virginica_1.0_genomic.fna (format: FASTA) Load in 358 db seqs, total size 685793667 bp. 14 secs passed total_kmers: 43046721 Create seed table. 88 secs passed max number of mismatches: read_length * 8% max gap size: 0 kmer cut-off ratio: 5e-07 max multi-hits: 100 max Ns: 5 seed size: 16 index interval: 4 quality cutoff: 0 base quality char: '!' min fragment size:28 max fragemt size:500 start from read #1 end at read #4294967295 additional alignment: T in reads => C in reference mapping strand: ++,-+ Single-end alignment(2 threads) Input read file: /Volumes/Alanine/wd/17-03-16b/20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC.fastq.gz (format: gzipped FASTQ) Output file: /Volumes/Alanine/wd/17-03-16c/bsmap_out_HB16_Oil_25000ppm_TTAGGC.sam (format: SAM) Thread #0: 50000 reads finished. 112 secs passed Thread #1: 100000 reads finished. 113 secs passed Thread #1: 200000 reads finished. 135 secs passed Thread #0: 150000 reads finished. 135 secs passed Thread #1: 250000 reads finished. 157 secs passed Thread #0: 300000 reads finished. 159 secs passed Thread #1: 350000 reads finished. 182 secs passed Thread #0: 400000 reads finished. 183 secs passed Thread #1: 450000 reads finished. 209 secs passed Thread #0: 500000 reads finished. 210 secs passed Thread #1: 550000 reads finished. 233 secs passed Thread #0: 600000 reads finished. 234 secs passed Thread #1: 650000 reads finished. 259 secs passed Thread #0: 700000 reads finished. 259 secs passed Thread #1: 750000 reads finished. 282 secs passed Thread #0: 800000 reads finished. 283 secs passed Thread #1: 850000 reads finished. 306 secs passed Thread #0: 900000 reads finished. 306 secs passed Thread #1: 950000 reads finished. 328 secs passed Thread #0: 1000000 reads finished. 329 secs passed Thread #1: 1050000 reads finished. 351 secs passed Thread #0: 1100000 reads finished. 352 secs passed Thread #1: 1150000 reads finished. 375 secs passed Thread #0: 1200000 reads finished. 376 secs passed Thread #1: 1250000 reads finished. 400 secs passed Thread #0: 1300000 reads finished. 401 secs passed Thread #1: 1350000 reads finished. 426 secs passed Thread #0: 1400000 reads finished. 427 secs passed Thread #1: 1450000 reads finished. 452 secs passed Thread #0: 1500000 reads finished. 453 secs passed Thread #1: 1550000 reads finished. 479 secs passed Thread #0: 1600000 reads finished. 479 secs passed Thread #1: 1650000 reads finished. 503 secs passed Thread #0: 1700000 reads finished. 504 secs passed Thread #1: 1750000 reads finished. 529 secs passed Thread #0: 1800000 reads finished. 529 secs passed Thread #1: 1850000 reads finished. 555 secs passed Thread #0: 1900000 reads finished. 555 secs passed Thread #1: 1950000 reads finished. 585 secs passed Thread #0: 2000000 reads finished. 586 secs passed Thread #1: 2050000 reads finished. 614 secs passed Thread #0: 2100000 reads finished. 615 secs passed Thread #1: 2150000 reads finished. 645 secs passed Thread #0: 2200000 reads finished. 646 secs passed Thread #1: 2250000 reads finished. 681 secs passed Thread #0: 2300000 reads finished. 684 secs passed Thread #1: 2350000 reads finished. 723 secs passed Thread #0: 2400000 reads finished. 726 secs passed Thread #1: 2450000 reads finished. 764 secs passed Thread #0: 2500000 reads finished. 766 secs passed Thread #1: 2550000 reads finished. 804 secs passed Thread #0: 2600000 reads finished. 807 secs passed Thread #1: 2650000 reads finished. 841 secs passed Thread #0: 2700000 reads finished. 844 secs passed Thread #1: 2750000 reads finished. 868 secs passed Thread #0: 2800000 reads finished. 871 secs passed Thread #1: 2850000 reads finished. 892 secs passed Thread #0: 2900000 reads finished. 895 secs passed Thread #1: 2950000 reads finished. 919 secs passed Thread #0: 3000000 reads finished. 921 secs passed Thread #1: 3050000 reads finished. 943 secs passed Thread #0: 3100000 reads finished. 945 secs passed Thread #1: 3150000 reads finished. 967 secs passed Thread #0: 3200000 reads finished. 969 secs passed Thread #1: 3250000 reads finished. 993 secs passed Thread #0: 3300000 reads finished. 995 secs passed Thread #1: 3350000 reads finished. 1018 secs passed Thread #0: 3400000 reads finished. 1021 secs passed Thread #1: 3450000 reads finished. 1046 secs passed Thread #0: 3500000 reads finished. 1049 secs passed Thread #1: 3550000 reads finished. 1080 secs passed Thread #0: 3600000 reads finished. 1084 secs passed Thread #1: 3650000 reads finished. 1111 secs passed Thread #0: 3700000 reads finished. 1116 secs passed Thread #1: 3750000 reads finished. 1141 secs passed Thread #0: 3800000 reads finished. 1146 secs passed Thread #1: 3850000 reads finished. 1172 secs passed Thread #0: 3900000 reads finished. 1176 secs passed Thread #1: 3950000 reads finished. 1201 secs passed Thread #0: 4000000 reads finished. 1206 secs passed Thread #1: 4050000 reads finished. 1230 secs passed Thread #0: 4100000 reads finished. 1234 secs passed Thread #1: 4150000 reads finished. 1256 secs passed Thread #0: 4200000 reads finished. 1261 secs passed Thread #1: 4250000 reads finished. 1286 secs passed Thread #0: 4300000 reads finished. 1290 secs passed Thread #1: 4350000 reads finished. 1312 secs passed Thread #0: 4400000 reads finished. 1318 secs passed Thread #1: 4450000 reads finished. 1342 secs passed Thread #0: 4500000 reads finished. 1346 secs passed Thread #1: 4550000 reads finished. 1370 secs passed Thread #0: 4600000 reads finished. 1374 secs passed Thread #1: 4650000 reads finished. 1395 secs passed Thread #0: 4700000 reads finished. 1400 secs passed Thread #1: 4750000 reads finished. 1422 secs passed Thread #0: 4800000 reads finished. 1427 secs passed Thread #1: 4850000 reads finished. 1447 secs passed Thread #0: 4900000 reads finished. 1452 secs passed Thread #1: 4950000 reads finished. 1473 secs passed Thread #0: 5000000 reads finished. 1479 secs passed Thread #1: 5050000 reads finished. 1500 secs passed Thread #0: 5100000 reads finished. 1504 secs passed Thread #1: 5150000 reads finished. 1525 secs passed Thread #0: 5200000 reads finished. 1529 secs passed Thread #1: 5250000 reads finished. 1551 secs passed Thread #0: 5300000 reads finished. 1556 secs passed Thread #1: 5350000 reads finished. 1575 secs passed Thread #0: 5400000 reads finished. 1580 secs passed Thread #1: 5450000 reads finished. 1600 secs passed Thread #0: 5500000 reads finished. 1605 secs passed Thread #1: 5550000 reads finished. 1623 secs passed Thread #0: 5600000 reads finished. 1628 secs passed Thread #1: 5650000 reads finished. 1647 secs passed Thread #0: 5700000 reads finished. 1652 secs passed Thread #1: 5750000 reads finished. 1669 secs passed Thread #0: 5800000 reads finished. 1674 secs passed Thread #1: 5850000 reads finished. 1692 secs passed Thread #0: 5900000 reads finished. 1697 secs passed Thread #1: 5950000 reads finished. 1715 secs passed Thread #0: 6000000 reads finished. 1720 secs passed Thread #1: 6050000 reads finished. 1737 secs passed Thread #0: 6100000 reads finished. 1743 secs passed Thread #1: 6150000 reads finished. 1760 secs passed Thread #0: 6200000 reads finished. 1766 secs passed Thread #1: 6250000 reads finished. 1782 secs passed Thread #0: 6300000 reads finished. 1788 secs passed Thread #1: 6350000 reads finished. 1804 secs passed Thread #0: 6400000 reads finished. 1809 secs passed Thread #1: 6450000 reads finished. 1827 secs passed Thread #0: 6500000 reads finished. 1832 secs passed Thread #1: 6550000 reads finished. 1849 secs passed Thread #0: 6600000 reads finished. 1854 secs passed Thread #1: 6650000 reads finished. 1870 secs passed Thread #0: 6700000 reads finished. 1876 secs passed Thread #1: 6750000 reads finished. 1892 secs passed Thread #0: 6800000 reads finished. 1898 secs passed Thread #1: 6850000 reads finished. 1913 secs passed Thread #0: 6900000 reads finished. 1922 secs passed Thread #1: 6950000 reads finished. 1937 secs passed Thread #0: 7000000 reads finished. 1946 secs passed Thread #1: 7050000 reads finished. 1961 secs passed Thread #0: 7100000 reads finished. 1970 secs passed Thread #1: 7150000 reads finished. 1985 secs passed Thread #0: 7200000 reads finished. 1994 secs passed Thread #1: 7250000 reads finished. 2009 secs passed Thread #0: 7300000 reads finished. 2017 secs passed Thread #1: 7350000 reads finished. 2033 secs passed Thread #0: 7400000 reads finished. 2040 secs passed Thread #1: 7450000 reads finished. 2055 secs passed Thread #0: 7500000 reads finished. 2063 secs passed Thread #1: 7550000 reads finished. 2078 secs passed Thread #0: 7600000 reads finished. 2087 secs passed Thread #1: 7650000 reads finished. 2102 secs passed Thread #0: 7700000 reads finished. 2110 secs passed Thread #1: 7750000 reads finished. 2125 secs passed Thread #0: 7800000 reads finished. 2134 secs passed Thread #1: 7850000 reads finished. 2149 secs passed Thread #0: 7900000 reads finished. 2157 secs passed Thread #1: 7950000 reads finished. 2172 secs passed Thread #0: 8000000 reads finished. 2181 secs passed Thread #1: 8050000 reads finished. 2195 secs passed Thread #0: 8100000 reads finished. 2203 secs passed Thread #1: 8150000 reads finished. 2217 secs passed Thread #0: 8200000 reads finished. 2225 secs passed Thread #1: 8250000 reads finished. 2240 secs passed Thread #0: 8300000 reads finished. 2249 secs passed Thread #1: 8350000 reads finished. 2262 secs passed Thread #0: 8400000 reads finished. 2272 secs passed Thread #1: 8450000 reads finished. 2285 secs passed Thread #0: 8500000 reads finished. 2295 secs passed Thread #1: 8550000 reads finished. 2309 secs passed Thread #0: 8600000 reads finished. 2318 secs passed Thread #1: 8650000 reads finished. 2335 secs passed Thread #0: 8700000 reads finished. 2346 secs passed Thread #1: 8750000 reads finished. 2361 secs passed Thread #0: 8800000 reads finished. 2370 secs passed Thread #1: 8850000 reads finished. 2385 secs passed Thread #0: 8900000 reads finished. 2395 secs passed Thread #1: 8950000 reads finished. 2409 secs passed Thread #0: 9000000 reads finished. 2418 secs passed Thread #1: 9050000 reads finished. 2432 secs passed Thread #0: 9100000 reads finished. 2440 secs passed Thread #1: 9150000 reads finished. 2454 secs passed Thread #0: 9200000 reads finished. 2462 secs passed Thread #1: 9250000 reads finished. 2476 secs passed Thread #0: 9300000 reads finished. 2484 secs passed Thread #1: 9350000 reads finished. 2499 secs passed Thread #0: 9400000 reads finished. 2508 secs passed Thread #1: 9450000 reads finished. 2520 secs passed Thread #0: 9500000 reads finished. 2529 secs passed Thread #1: 9550000 reads finished. 2542 secs passed Thread #0: 9600000 reads finished. 2551 secs passed Thread #1: 9650000 reads finished. 2564 secs passed Thread #0: 9700000 reads finished. 2573 secs passed Thread #1: 9750000 reads finished. 2585 secs passed Thread #0: 9800000 reads finished. 2593 secs passed Thread #1: 9850000 reads finished. 2602 secs passed Thread #0: 9900000 reads finished. 2610 secs passed Thread #1: 9950000 reads finished. 2621 secs passed Thread #0: 10000000 reads finished. 2629 secs passed Thread #1: 10050000 reads finished. 2639 secs passed Thread #0: 10100000 reads finished. 2647 secs passed Thread #1: 10150000 reads finished. 2658 secs passed Thread #0: 10200000 reads finished. 2668 secs passed Thread #1: 10250000 reads finished. 2679 secs passed Thread #0: 10300000 reads finished. 2691 secs passed Thread #1: 10350000 reads finished. 2701 secs passed Thread #0: 10400000 reads finished. 2713 secs passed Thread #1: 10450000 reads finished. 2722 secs passed Thread #0: 10500000 reads finished. 2736 secs passed Thread #1: 10550000 reads finished. 2747 secs passed Thread #0: 10600000 reads finished. 2761 secs passed Thread #1: 10650000 reads finished. 2773 secs passed Thread #0: 10700000 reads finished. 2787 secs passed Thread #1: 10750000 reads finished. 2799 secs passed Thread #0: 10800000 reads finished. 2813 secs passed Thread #1: 10850000 reads finished. 2823 secs passed Thread #0: 10900000 reads finished. 2838 secs passed Thread #1: 10950000 reads finished. 2847 secs passed Thread #0: 11000000 reads finished. 2864 secs passed Thread #1: 11050000 reads finished. 2873 secs passed Thread #0: 11100000 reads finished. 2889 secs passed Thread #1: 11150000 reads finished. 2898 secs passed Thread #0: 11200000 reads finished. 2913 secs passed Thread #1: 11250000 reads finished. 2922 secs passed Thread #0: 11300000 reads finished. 2937 secs passed Thread #1: 11350000 reads finished. 2945 secs passed Thread #0: 11400000 reads finished. 2959 secs passed Thread #1: 11450000 reads finished. 2968 secs passed Thread #0: 11500000 reads finished. 2983 secs passed Thread #1: 11550000 reads finished. 2991 secs passed Thread #0: 11600000 reads finished. 3007 secs passed Thread #1: 11650000 reads finished. 3014 secs passed Thread #0: 11700000 reads finished. 3032 secs passed Thread #1: 11750000 reads finished. 3041 secs passed Thread #0: 11800000 reads finished. 3058 secs passed Thread #1: 11850000 reads finished. 3067 secs passed Thread #0: 11900000 reads finished. 3087 secs passed Thread #1: 11950000 reads finished. 3096 secs passed Thread #0: 12000000 reads finished. 3116 secs passed Thread #1: 12050000 reads finished. 3125 secs passed Thread #0: 12100000 reads finished. 3143 secs passed Thread #1: 12150000 reads finished. 3154 secs passed Thread #0: 12200000 reads finished. 3172 secs passed Thread #1: 12250000 reads finished. 3181 secs passed Thread #0: 12300000 reads finished. 3198 secs passed Thread #1: 12350000 reads finished. 3205 secs passed Thread #0: 12400000 reads finished. 3222 secs passed Thread #1: 12450000 reads finished. 3230 secs passed Thread #0: 12500000 reads finished. 3249 secs passed Thread #1: 12550000 reads finished. 3257 secs passed Thread #0: 12600000 reads finished. 3276 secs passed Thread #1: 12650000 reads finished. 3284 secs passed Thread #0: 12700000 reads finished. 3300 secs passed Thread #1: 12750000 reads finished. 3309 secs passed Thread #0: 12800000 reads finished. 3326 secs passed Thread #1: 12850000 reads finished. 3334 secs passed Thread #0: 12900000 reads finished. 3350 secs passed Thread #1: 12950000 reads finished. 3356 secs passed Thread #0: 13000000 reads finished. 3372 secs passed Thread #1: 13050000 reads finished. 3379 secs passed Thread #0: 13100000 reads finished. 3391 secs passed Thread #1: 13150000 reads finished. 3395 secs passed Thread #0: 13200000 reads finished. 3410 secs passed Thread #1: 13250000 reads finished. 3416 secs passed Thread #0: 13300000 reads finished. 3433 secs passed Thread #1: 13350000 reads finished. 3439 secs passed Thread #0: 13400000 reads finished. 3455 secs passed Thread #1: 13450000 reads finished. 3461 secs passed Thread #0: 13500000 reads finished. 3478 secs passed Thread #1: 13550000 reads finished. 3484 secs passed Thread #0: 13600000 reads finished. 3501 secs passed Thread #1: 13650000 reads finished. 3507 secs passed Thread #0: 13700000 reads finished. 3525 secs passed Thread #1: 13750000 reads finished. 3531 secs passed Thread #0: 13800000 reads finished. 3549 secs passed Thread #1: 13850000 reads finished. 3555 secs passed Thread #0: 13900000 reads finished. 3575 secs passed Thread #1: 13950000 reads finished. 3580 secs passed Thread #0: 14000000 reads finished. 3597 secs passed Thread #1: 14050000 reads finished. 3605 secs passed Thread #0: 14100000 reads finished. 3623 secs passed Thread #1: 14150000 reads finished. 3630 secs passed Thread #0: 14200000 reads finished. 3649 secs passed Thread #1: 14250000 reads finished. 3656 secs passed Thread #0: 14300000 reads finished. 3675 secs passed Thread #1: 14350000 reads finished. 3684 secs passed Thread #0: 14400000 reads finished. 3702 secs passed Thread #1: 14450000 reads finished. 3709 secs passed Thread #0: 14500000 reads finished. 3726 secs passed Thread #1: 14550000 reads finished. 3732 secs passed Thread #0: 14600000 reads finished. 3751 secs passed Thread #1: 14650000 reads finished. 3757 secs passed Thread #0: 14700000 reads finished. 3775 secs passed Thread #1: 14750000 reads finished. 3782 secs passed Thread #0: 14800000 reads finished. 3799 secs passed Thread #1: 14850000 reads finished. 3806 secs passed Thread #0: 14900000 reads finished. 3824 secs passed Thread #1: 14950000 reads finished. 3831 secs passed Thread #0: 15000000 reads finished. 3849 secs passed Thread #1: 15050000 reads finished. 3855 secs passed Thread #0: 15100000 reads finished. 3873 secs passed Thread #1: 15150000 reads finished. 3879 secs passed Thread #0: 15200000 reads finished. 3897 secs passed Thread #1: 15250000 reads finished. 3903 secs passed Thread #0: 15300000 reads finished. 3922 secs passed Thread #1: 15350000 reads finished. 3928 secs passed Thread #0: 15400000 reads finished. 3946 secs passed Thread #1: 15450000 reads finished. 3952 secs passed Thread #0: 15500000 reads finished. 3969 secs passed Thread #1: 15550000 reads finished. 3975 secs passed Thread #0: 15600000 reads finished. 3993 secs passed Thread #1: 15650000 reads finished. 3999 secs passed Thread #0: 15700000 reads finished. 4018 secs passed Thread #1: 15750000 reads finished. 4025 secs passed Thread #0: 15800000 reads finished. 4045 secs passed Thread #1: 15850000 reads finished. 4052 secs passed Thread #0: 15900000 reads finished. 4071 secs passed Thread #1: 15950000 reads finished. 4077 secs passed Thread #0: 16000000 reads finished. 4097 secs passed Thread #1: 16050000 reads finished. 4105 secs passed Thread #0: 16100000 reads finished. 4124 secs passed Thread #1: 16150000 reads finished. 4130 secs passed Thread #0: 16200000 reads finished. 4149 secs passed Thread #1: 16250000 reads finished. 4156 secs passed Thread #0: 16300000 reads finished. 4175 secs passed Thread #1: 16350000 reads finished. 4182 secs passed Thread #0: 16400000 reads finished. 4200 secs passed Thread #1: 16450000 reads finished. 4206 secs passed Thread #0: 16500000 reads finished. 4224 secs passed Thread #1: 16550000 reads finished. 4230 secs passed Thread #0: 16600000 reads finished. 4249 secs passed Thread #1: 16650000 reads finished. 4254 secs passed Thread #0: 16700000 reads finished. 4272 secs passed Thread #1: 16750000 reads finished. 4277 secs passed Thread #0: 16800000 reads finished. 4295 secs passed Thread #1: 16850000 reads finished. 4301 secs passed Thread #0: 16900000 reads finished. 4319 secs passed Thread #1: 16950000 reads finished. 4323 secs passed Thread #0: 17000000 reads finished. 4342 secs passed Thread #1: 17050000 reads finished. 4346 secs passed Thread #0: 17100000 reads finished. 4363 secs passed Thread #1: 17150000 reads finished. 4369 secs passed Thread #0: 17200000 reads finished. 4387 secs passed Thread #1: 17250000 reads finished. 4392 secs passed Thread #0: 17300000 reads finished. 4409 secs passed Thread #1: 17350000 reads finished. 4414 secs passed Thread #0: 17400000 reads finished. 4432 secs passed Thread #1: 17450000 reads finished. 4437 secs passed Thread #0: 17500000 reads finished. 4455 secs passed Thread #1: 17550000 reads finished. 4459 secs passed Thread #0: 17600000 reads finished. 4477 secs passed Thread #1: 17650000 reads finished. 4482 secs passed Thread #0: 17700000 reads finished. 4499 secs passed Thread #1: 17750000 reads finished. 4503 secs passed Thread #0: 17800000 reads finished. 4523 secs passed Thread #1: 17850000 reads finished. 4528 secs passed Thread #0: 17900000 reads finished. 4546 secs passed Thread #1: 17950000 reads finished. 4551 secs passed Thread #0: 18000000 reads finished. 4571 secs passed Thread #1: 18050000 reads finished. 4575 secs passed Thread #0: 18100000 reads finished. 4595 secs passed Thread #1: 18150000 reads finished. 4599 secs passed Thread #0: 18200000 reads finished. 4619 secs passed Thread #1: 18250000 reads finished. 4623 secs passed Thread #0: 18300000 reads finished. 4643 secs passed Thread #1: 18350000 reads finished. 4648 secs passed Thread #0: 18400000 reads finished. 4668 secs passed Thread #1: 18450000 reads finished. 4672 secs passed Thread #0: 18500000 reads finished. 4691 secs passed Thread #1: 18550000 reads finished. 4695 secs passed Thread #0: 18600000 reads finished. 4714 secs passed Thread #1: 18650000 reads finished. 4719 secs passed Thread #0: 18700000 reads finished. 4737 secs passed Thread #1: 18750000 reads finished. 4742 secs passed Thread #0: 18800000 reads finished. 4762 secs passed Thread #1: 18850000 reads finished. 4766 secs passed Thread #0: 18900000 reads finished. 4785 secs passed Thread #1: 18950000 reads finished. 4789 secs passed Thread #0: 19000000 reads finished. 4808 secs passed Thread #1: 19050000 reads finished. 4812 secs passed Thread #0: 19100000 reads finished. 4833 secs passed Thread #1: 19150000 reads finished. 4837 secs passed Thread #0: 19200000 reads finished. 4857 secs passed Thread #1: 19250000 reads finished. 4860 secs passed Thread #0: 19300000 reads finished. 4879 secs passed Thread #1: 19350000 reads finished. 4883 secs passed Thread #0: 19400000 reads finished. 4903 secs passed Thread #1: 19450000 reads finished. 4907 secs passed Thread #0: 19500000 reads finished. 4927 secs passed Thread #1: 19550000 reads finished. 4931 secs passed Thread #0: 19600000 reads finished. 4950 secs passed Thread #1: 19650000 reads finished. 4954 secs passed Thread #0: 19700000 reads finished. 4973 secs passed Thread #1: 19750000 reads finished. 4977 secs passed Thread #0: 19800000 reads finished. 4996 secs passed Thread #1: 19850000 reads finished. 5001 secs passed Thread #0: 19900000 reads finished. 5020 secs passed Thread #1: 19950000 reads finished. 5024 secs passed Thread #0: 20000000 reads finished. 5043 secs passed Thread #1: 20050000 reads finished. 5047 secs passed Thread #0: 20100000 reads finished. 5066 secs passed Thread #1: 20150000 reads finished. 5071 secs passed Thread #0: 20200000 reads finished. 5089 secs passed Thread #1: 20250000 reads finished. 5093 secs passed Thread #0: 20300000 reads finished. 5112 secs passed Thread #1: 20350000 reads finished. 5117 secs passed Thread #0: 20400000 reads finished. 5135 secs passed Thread #1: 20450000 reads finished. 5139 secs passed Thread #0: 20500000 reads finished. 5158 secs passed Thread #1: 20550000 reads finished. 5162 secs passed Thread #0: 20600000 reads finished. 5180 secs passed Thread #1: 20650000 reads finished. 5184 secs passed Thread #0: 20700000 reads finished. 5203 secs passed Thread #1: 20750000 reads finished. 5207 secs passed Thread #0: 20800000 reads finished. 5226 secs passed Thread #1: 20850000 reads finished. 5230 secs passed Thread #0: 20900000 reads finished. 5249 secs passed Thread #1: 20950000 reads finished. 5252 secs passed Thread #0: 21000000 reads finished. 5271 secs passed Thread #1: 21050000 reads finished. 5275 secs passed Thread #0: 21100000 reads finished. 5293 secs passed Thread #1: 21150000 reads finished. 5297 secs passed Thread #0: 21200000 reads finished. 5315 secs passed Thread #1: 21250000 reads finished. 5319 secs passed Thread #0: 21300000 reads finished. 5337 secs passed Thread #1: 21350000 reads finished. 5340 secs passed Thread #0: 21400000 reads finished. 5359 secs passed Thread #1: 21450000 reads finished. 5362 secs passed Thread #0: 21462840 reads finished. 5364 secs passed Total number of aligned reads: 2914017 (14%) Done. Finished at Thu Mar 16 15:27:55 2017 Total time consumed: 5364 secs