@ Tue Mar 21 09:03:31 2017: reading reference /Volumes/Alanine/wd/17-03-16/OlyBGI-scaffold-10k.fa ...
@ Tue Mar 21 09:03:38 2017: reading /Volumes/Alanine/wd/17-03-16/bsmap_out_3.sam ...
[samopen] SAM header is present: 11495 sequences.
@ Tue Mar 21 09:04:15 2017: combining CpG methylation from both strands ...
@ Tue Mar 21 09:04:21 2017: writing /Volumes/Alanine/wd/17-03-16/methratio_out_3.txt ...
@ Tue Mar 21 09:05:05 2017: done.