```r
myDiff=calculateDiffMeth(meth)
```

```
## two groups detected:
##  will calculate methylation difference as the difference of
## treatment (group: 1) - control (group: 0)
```

```
## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred

## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
```

```
## Warning: glm.fit: algorithm did not converge
```

```
## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
```

```
## Warning: glm.fit: algorithm did not converge
```

```
## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred

## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
```

```
## Warning: glm.fit: algorithm did not converge
```

```
## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
```