File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated CpHs	Unmethylated CpHs	Methylated CHHs	Unmethylated CHHs
1_ATCACG_L001_R1_001_bismark_bt2.bam	1000	618	95	287	0	5	613	5608	264	585	44	1040	239	3436
2_CGATGT_L001_R1_001_bismark_bt2.bam	1000	594	105	301	0	4	590	5210	228	566	49	964	310	3093
3_TTAGGC_L001_R1_001_bismark_bt2.bam	1000	623	88	288	1	4	619	5552	255	665	58	1037	288	3249
4_TGACCA_L001_R1_001_bismark_bt2.bam	1000	615	91	294	0	4	611	5552	276	612	41	1051	270	3302
5_ACAGTG_L001_R1_001_bismark_bt2.bam	1000	623	113	263	1	4	619	5520	268	584	36	1039	313	3280
6_GCCAAT_L001_R1_001_bismark_bt2.bam	1000	608	117	275	0	5	603	5551	270	631	44	1064	260	3282
7_CAGATC_L001_R1_001_bismark_bt2.bam	1000	602	99	299	0	3	599	5333	271	618	41	987	253	3163
8_ACTTGA_L001_R1_001_bismark_bt2.bam	1000	621	107	272	0	2	619	5593	239	625	29	1102	245	3353