3_TTAGGC_L001_R1_001_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 619 lines in total Total number of methylation call strings processed: 619 Final Cytosine Methylation Report ================================= Total number of C's analysed: 5552 Total methylated C's in CpG context: 255 Total methylated C's in CHG context: 58 Total methylated C's in CHH context: 288 Total C to T conversions in CpG context: 665 Total C to T conversions in CHG context: 1037 Total C to T conversions in CHH context: 3249 C methylated in CpG context: 27.7% C methylated in CHG context: 5.3% C methylated in CHH context: 8.1%