2_CGATGT_L001_R1_001_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 590 lines in total Total number of methylation call strings processed: 590 Final Cytosine Methylation Report ================================= Total number of C's analysed: 5210 Total methylated C's in CpG context: 228 Total methylated C's in CHG context: 49 Total methylated C's in CHH context: 310 Total C to T conversions in CpG context: 566 Total C to T conversions in CHG context: 964 Total C to T conversions in CHH context: 3093 C methylated in CpG context: 28.7% C methylated in CHG context: 4.8% C methylated in CHH context: 9.1%