Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
185847297 |
| Sequences without alignments under any condition |
176357696 |
| Sequences that did not map uniquely |
243604381 |
| Genomic sequence context not extractable (edges of chromosomes) |
188442 |
|
|
Cytosine Methylation
| Total C's analysed |
1155350419 |
| Methylated C's in CpG context |
175386903 |
| Methylated C's in CHG context |
5220316 |
| Methylated C's in CHH context |
61488338 |
| Methylated C's in Unknown context |
32115 |
| Unmethylated C's in CpG context |
30952288 |
| Unmethylated C's in CHG context |
231484923 |
| Unmethylated C's in CHH context |
650817651 |
| Unmethylated C's in Unknown context |
213338 |
| Percentage methylation (CpG context) |
85.0% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
42572282 |
original top strand |
| CTOT |
50633709 |
complementary to original top strand |
| CTOB |
50202213 |
complementary to original bottom strand |
| OB |
42250651 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
185658855 |
| Unique alignments |
61397782 |
| Duplicates removed |
124261073 |
| Duplicated alignments were found at 20887234 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
366293238 |
| Methylated C's in CpG context |
37861620 |
| Methylated C's in CHG context |
2119087 |
| Methylated C's in CHH context |
31889543 |
| Unmethylated C's in CpG context |
11160761 |
| Unmethylated C's in CHG context |
61988385 |
| Unmethylated C's in CHH context |
221273842 |
| Percentage methylation (CpG context) |
77.2% |
| Percentage methylation (CHG context) |
3.3% |
| Percentage methylation (CHH context) |
12.6% |
|
|
M-Bias Plot
