zr1394_4_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 9579915 lines in total Total number of methylation call strings processed: 9579915 Final Cytosine Methylation Report ================================= Total number of C's analysed: 57797022 Total methylated C's in CpG context: 7147884 Total methylated C's in CHG context: 292457 Total methylated C's in CHH context: 3772656 Total C to T conversions in CpG context: 1323418 Total C to T conversions in CHG context: 10962379 Total C to T conversions in CHH context: 34298228 C methylated in CpG context: 84.4% C methylated in CHG context: 2.6% C methylated in CHH context: 9.9%