Alignment Stats
| Sequences analysed in total |
48376729 |
| Single-end alignments with a unique best hit |
14840591 |
| Sequences without alignments under any condition |
14694166 |
| Sequences that did not map uniquely |
18841972 |
| Genomic sequence context not extractable (edges of chromosomes) |
14196 |
|
|
Cytosine Methylation
| Total C's analysed |
89652817 |
| Methylated C's in CpG context |
11470218 |
| Methylated C's in CHG context |
407520 |
| Methylated C's in CHH context |
5151567 |
| Methylated C's in Unknown context |
2367 |
| Unmethylated C's in CpG context |
2387780 |
| Unmethylated C's in CHG context |
17217824 |
| Unmethylated C's in CHH context |
53017908 |
| Unmethylated C's in Unknown context |
16543 |
| Percentage methylation (CpG context) |
82.8% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3320140 |
original top strand |
| CTOT |
4125404 |
complementary to original top strand |
| CTOB |
4086362 |
complementary to original bottom strand |
| OB |
3294489 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14826395 |
| Unique alignments |
10505676 |
| Duplicates removed |
4320719 |
| Duplicated alignments were found at 1737411 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
62586254 |
| Methylated C's in CpG context |
7108309 |
| Methylated C's in CHG context |
298530 |
| Methylated C's in CHH context |
4119726 |
| Unmethylated C's in CpG context |
1714938 |
| Unmethylated C's in CHG context |
11486929 |
| Unmethylated C's in CHH context |
37857822 |
| Percentage methylation (CpG context) |
80.6% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
