zr1394_3_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10505676 lines in total Total number of methylation call strings processed: 10505676 Final Cytosine Methylation Report ================================= Total number of C's analysed: 62586254 Total methylated C's in CpG context: 7108309 Total methylated C's in CHG context: 298530 Total methylated C's in CHH context: 4119726 Total C to T conversions in CpG context: 1714938 Total C to T conversions in CHG context: 11486929 Total C to T conversions in CHH context: 37857822 C methylated in CpG context: 80.6% C methylated in CHG context: 2.5% C methylated in CHH context: 9.8%