Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
25540537 |
| Sequences without alignments under any condition |
26159848 |
| Sequences that did not map uniquely |
36134252 |
| Genomic sequence context not extractable (edges of chromosomes) |
24870 |
|
|
Cytosine Methylation
| Total C's analysed |
158553310 |
| Methylated C's in CpG context |
24149603 |
| Methylated C's in CHG context |
702690 |
| Methylated C's in CHH context |
8156302 |
| Methylated C's in Unknown context |
4326 |
| Unmethylated C's in CpG context |
4183914 |
| Unmethylated C's in CHG context |
30112585 |
| Unmethylated C's in CHH context |
91248216 |
| Unmethylated C's in Unknown context |
30706 |
| Percentage methylation (CpG context) |
85.2% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5727222 |
original top strand |
| CTOT |
7068691 |
complementary to original top strand |
| CTOB |
7018516 |
complementary to original bottom strand |
| OB |
5701238 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
25515667 |
| Unique alignments |
14431531 |
| Duplicates removed |
11084136 |
| Duplicated alignments were found at 3322076 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
87759971 |
| Methylated C's in CpG context |
11235176 |
| Methylated C's in CHG context |
442616 |
| Methylated C's in CHH context |
5958507 |
| Unmethylated C's in CpG context |
2398111 |
| Unmethylated C's in CHG context |
15471847 |
| Unmethylated C's in CHH context |
52253714 |
| Percentage methylation (CpG context) |
82.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
10.2% |
|
|
M-Bias Plot
|
