zr1394_12_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 13660276 lines in total Total number of methylation call strings processed: 13660276 Final Cytosine Methylation Report ================================= Total number of C's analysed: 80756458 Total methylated C's in CpG context: 8385192 Total methylated C's in CHG context: 335216 Total methylated C's in CHH context: 5285129 Total C to T conversions in CpG context: 2342276 Total C to T conversions in CHG context: 15323134 Total C to T conversions in CHH context: 49085511 C methylated in CpG context: 78.2% C methylated in CHG context: 2.1% C methylated in CHH context: 9.7%