/gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F2_S22_L002_R1_001_val_1.fq.gz and /gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F2_S22_L002_R2_001_val_2.fq.gz
Data processed at 15:57 on 2020-02-04
Alignment Stats
Sequence pairs analysed in total
81606018
Paired-end alignments with a unique best hit
17584142
Pairs without alignments under any condition
51170344
Pairs that did not map uniquely
12851532
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
761182841
Methylated C's in CpG context
1619428
Methylated C's in CHG context
1312509
Methylated C's in CHH context
7923134
Methylated C's in Unknown context
866500
Unmethylated C's in CpG context
122527945
Unmethylated C's in CHG context
127216928
Unmethylated C's in CHH context
500582897
Unmethylated C's in Unknown context
6668909
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
1.0%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4441844
original top strand
CTOT
4370400
complementary to original top strand
CTOB
4356733
complementary to original bottom strand
OB
4415163
original bottom strand
Deduplication
Alignments analysed
17584140
Unique alignments
14322894
Duplicates removed
3261246
Duplicated alignments were found at 2198526 different positions
