[bwa_index] Pack FASTA... 0.11 sec [bwa_index] Construct BWT for the packed sequence... [bwa_index] 0.91 seconds elapse. [bwa_index] Update BWT... 0.03 sec [bwa_index] Pack forward-only FASTA... 0.09 sec [bwa_index] Construct SA from BWT and Occ... 0.50 sec [main] Version: 0.7.17-r1188 [main] CMD: bwa index reference.fasta [main] Real time: 2.366 sec; CPU: 1.653 sec