[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555996 sequences (80000060 bp)...
[M::process] read 556044 sequences (80000279 bp)...
[M::mem_process_seqs] Processed 555996 reads in 168.592 CPU sec, 21.015 real sec
[M::process] read 556044 sequences (80000117 bp)...
[M::mem_process_seqs] Processed 556044 reads in 172.683 CPU sec, 21.206 real sec
[M::process] read 556004 sequences (80000123 bp)...
[M::mem_process_seqs] Processed 556044 reads in 173.846 CPU sec, 21.366 real sec
[M::process] read 556052 sequences (80000126 bp)...
[M::mem_process_seqs] Processed 556004 reads in 170.438 CPU sec, 20.930 real sec
[M::process] read 29340 sequences (4221169 bp)...
[M::mem_process_seqs] Processed 556052 reads in 171.985 CPU sec, 21.264 real sec
[M::mem_process_seqs] Processed 29340 reads in 10.405 CPU sec, 1.224 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SewardAK_320\tSM:SewardAK_320\tPL:Illumina reference.fasta SewardAK_320.R1.fq.gz
[main] Real time: 110.858 sec; CPU: 870.250 sec