[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555906 sequences (80000066 bp)...
[M::process] read 555914 sequences (80000217 bp)...
[M::mem_process_seqs] Processed 555906 reads in 167.810 CPU sec, 20.935 real sec
[M::process] read 555814 sequences (80000035 bp)...
[M::mem_process_seqs] Processed 555914 reads in 171.586 CPU sec, 21.082 real sec
[M::process] read 217019 sequences (31231488 bp)...
[M::mem_process_seqs] Processed 555814 reads in 172.765 CPU sec, 21.329 real sec
[M::mem_process_seqs] Processed 217019 reads in 70.957 CPU sec, 8.610 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SewardAK_310\tSM:SewardAK_310\tPL:Illumina reference.fasta SewardAK_310.R1.fq.gz
[main] Real time: 75.275 sec; CPU: 585.573 sec