[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000057 bp)...
[M::process] read 555560 sequences (80000090 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.728 CPU sec, 20.417 real sec
[M::process] read 555560 sequences (80000223 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.265 CPU sec, 20.561 real sec
[M::process] read 555558 sequences (80000020 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.931 CPU sec, 20.619 real sec
[M::process] read 555558 sequences (80000069 bp)...
[M::mem_process_seqs] Processed 555558 reads in 165.975 CPU sec, 20.385 real sec
[M::process] read 294126 sequences (42353987 bp)...
[M::mem_process_seqs] Processed 555558 reads in 168.209 CPU sec, 20.734 real sec
[M::mem_process_seqs] Processed 294126 reads in 90.851 CPU sec, 11.153 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG035\tSM:SekiuWA_FG035\tPL:Illumina reference.fasta SekiuWA_FG035.R1.fq.gz
[main] Real time: 118.057 sec; CPU: 926.352 sec