[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000004 bp)...
[M::process] read 555560 sequences (80000261 bp)...
[M::mem_process_seqs] Processed 555558 reads in 162.214 CPU sec, 20.238 real sec
[M::process] read 555558 sequences (80000008 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.260 CPU sec, 20.453 real sec
[M::process] read 555558 sequences (80000038 bp)...
[M::mem_process_seqs] Processed 555558 reads in 167.285 CPU sec, 20.583 real sec
[M::process] read 555560 sequences (80000265 bp)...
[M::mem_process_seqs] Processed 555558 reads in 164.912 CPU sec, 20.294 real sec
[M::process] read 250822 sequences (36118220 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.059 CPU sec, 20.494 real sec
[M::mem_process_seqs] Processed 250822 reads in 77.952 CPU sec, 9.540 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG034\tSM:SekiuWA_FG034\tPL:Illumina reference.fasta SekiuWA_FG034.R1.fq.gz
[main] Real time: 115.224 sec; CPU: 906.844 sec