[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000247 bp)...
[M::process] read 555560 sequences (80000184 bp)...
[M::mem_process_seqs] Processed 555560 reads in 165.400 CPU sec, 20.603 real sec
[M::process] read 555560 sequences (80000072 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.305 CPU sec, 20.596 real sec
[M::process] read 555560 sequences (80000081 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.740 CPU sec, 20.604 real sec
[M::process] read 555560 sequences (80000156 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.706 CPU sec, 20.470 real sec
[M::process] read 555560 sequences (80000245 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.240 CPU sec, 20.555 real sec
[M::process] read 555560 sequences (80000275 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.264 CPU sec, 20.037 real sec
[M::process] read 555560 sequences (80000228 bp)...
[M::mem_process_seqs] Processed 555560 reads in 164.817 CPU sec, 20.264 real sec
[M::process] read 555560 sequences (80000247 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.217 CPU sec, 20.445 real sec
[M::process] read 76247 sequences (10979511 bp)...
[M::mem_process_seqs] Processed 555560 reads in 165.067 CPU sec, 20.430 real sec
[M::mem_process_seqs] Processed 76247 reads in 26.929 CPU sec, 3.157 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG033\tSM:SekiuWA_FG033\tPL:Illumina reference.fasta SekiuWA_FG033.R1.fq.gz
[main] Real time: 189.040 sec; CPU: 1522.271 sec