[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000102 bp)...
[M::process] read 555558 sequences (80000029 bp)...
[M::mem_process_seqs] Processed 555558 reads in 162.557 CPU sec, 20.257 real sec
[M::process] read 555558 sequences (80000062 bp)...
[M::mem_process_seqs] Processed 555558 reads in 166.328 CPU sec, 20.479 real sec
[M::process] read 555558 sequences (80000037 bp)...
[M::mem_process_seqs] Processed 555558 reads in 166.421 CPU sec, 20.478 real sec
[M::process] read 555558 sequences (80000081 bp)...
[M::mem_process_seqs] Processed 555558 reads in 166.157 CPU sec, 20.404 real sec
[M::process] read 555558 sequences (80000110 bp)...
[M::mem_process_seqs] Processed 555558 reads in 168.396 CPU sec, 20.689 real sec
[M::process] read 210894 sequences (30368628 bp)...
[M::mem_process_seqs] Processed 555558 reads in 165.928 CPU sec, 20.411 real sec
[M::mem_process_seqs] Processed 210894 reads in 65.626 CPU sec, 7.992 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG032\tSM:SekiuWA_FG032\tPL:Illumina reference.fasta SekiuWA_FG032.R1.fq.gz
[main] Real time: 133.930 sec; CPU: 1063.470 sec