[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000215 bp)...
[M::process] read 555560 sequences (80000104 bp)...
[M::mem_process_seqs] Processed 555560 reads in 165.419 CPU sec, 20.605 real sec
[M::process] read 555560 sequences (80000019 bp)...
[M::mem_process_seqs] Processed 555560 reads in 169.244 CPU sec, 20.816 real sec
[M::process] read 555560 sequences (80000254 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.849 CPU sec, 20.648 real sec
[M::process] read 555558 sequences (80000066 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.083 CPU sec, 20.505 real sec
[M::process] read 555558 sequences (80000090 bp)...
[M::mem_process_seqs] Processed 555558 reads in 167.074 CPU sec, 20.521 real sec
[M::process] read 241399 sequences (34761301 bp)...
[M::mem_process_seqs] Processed 555558 reads in 168.051 CPU sec, 20.727 real sec
[M::mem_process_seqs] Processed 241399 reads in 76.734 CPU sec, 9.368 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG031\tSM:SekiuWA_FG031\tPL:Illumina reference.fasta SekiuWA_FG031.R1.fq.gz
[main] Real time: 136.467 sec; CPU: 1083.659 sec