[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556204 sequences (80000095 bp)...
[M::process] read 556288 sequences (80000124 bp)...
[M::mem_process_seqs] Processed 556204 reads in 174.573 CPU sec, 21.782 real sec
[M::process] read 556166 sequences (80000282 bp)...
[M::mem_process_seqs] Processed 556288 reads in 178.216 CPU sec, 21.947 real sec
[M::process] read 556214 sequences (80000077 bp)...
[M::mem_process_seqs] Processed 556166 reads in 175.150 CPU sec, 21.504 real sec
[M::process] read 107074 sequences (15397729 bp)...
[M::mem_process_seqs] Processed 556214 reads in 175.570 CPU sec, 21.699 real sec
[M::mem_process_seqs] Processed 107074 reads in 38.440 CPU sec, 4.601 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG030\tSM:SekiuWA_FG030\tPL:Illumina reference.fasta SekiuWA_FG030.R1.fq.gz
[main] Real time: 93.655 sec; CPU: 743.551 sec