[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555998 sequences (80000055 bp)...
[M::process] read 556024 sequences (80000110 bp)...
[M::mem_process_seqs] Processed 555998 reads in 165.778 CPU sec, 20.652 real sec
[M::process] read 555962 sequences (80000216 bp)...
[M::mem_process_seqs] Processed 556024 reads in 171.689 CPU sec, 21.101 real sec
[M::process] read 200225 sequences (28806435 bp)...
[M::mem_process_seqs] Processed 555962 reads in 172.010 CPU sec, 21.219 real sec
[M::mem_process_seqs] Processed 200225 reads in 65.629 CPU sec, 7.947 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG029\tSM:SekiuWA_FG029\tPL:Illumina reference.fasta SekiuWA_FG029.R1.fq.gz
[main] Real time: 74.286 sec; CPU: 577.241 sec