[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000058 bp)...
[M::process] read 555558 sequences (80000000 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.993 CPU sec, 20.438 real sec
[M::process] read 555562 sequences (80000269 bp)...
[M::mem_process_seqs] Processed 555558 reads in 167.213 CPU sec, 20.539 real sec
[M::process] read 555560 sequences (80000101 bp)...
[M::mem_process_seqs] Processed 555562 reads in 167.266 CPU sec, 20.559 real sec
[M::process] read 555560 sequences (80000233 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.228 CPU sec, 20.455 real sec
[M::process] read 555558 sequences (80000011 bp)...
[M::mem_process_seqs] Processed 555560 reads in 165.484 CPU sec, 20.355 real sec
[M::process] read 555560 sequences (80000244 bp)...
[M::mem_process_seqs] Processed 555558 reads in 166.612 CPU sec, 20.456 real sec
[M::process] read 555558 sequences (80000012 bp)...
[M::mem_process_seqs] Processed 555560 reads in 166.905 CPU sec, 20.537 real sec
[M::process] read 455492 sequences (65590576 bp)...
[M::mem_process_seqs] Processed 555558 reads in 168.112 CPU sec, 20.699 real sec
[M::mem_process_seqs] Processed 455492 reads in 135.427 CPU sec, 16.715 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG027\tSM:SekiuWA_FG027\tPL:Illumina reference.fasta SekiuWA_FG027.R1.fq.gz
[main] Real time: 184.760 sec; CPU: 1469.783 sec