[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000286 bp)...
[M::process] read 555560 sequences (80000157 bp)...
[M::mem_process_seqs] Processed 555560 reads in 159.564 CPU sec, 19.899 real sec
[M::process] read 555560 sequences (80000087 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.256 CPU sec, 20.078 real sec
[M::process] read 555558 sequences (80000016 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.129 CPU sec, 20.055 real sec
[M::process] read 555558 sequences (80000054 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.019 CPU sec, 20.033 real sec
[M::process] read 540560 sequences (77840289 bp)...
[M::mem_process_seqs] Processed 555558 reads in 165.709 CPU sec, 20.355 real sec
[M::mem_process_seqs] Processed 540560 reads in 159.125 CPU sec, 19.674 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG026\tSM:SekiuWA_FG026\tPL:Illumina reference.fasta SekiuWA_FG026.R1.fq.gz
[main] Real time: 124.647 sec; CPU: 976.655 sec