[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000182 bp)...
[M::process] read 555560 sequences (80000275 bp)...
[M::mem_process_seqs] Processed 555560 reads in 159.355 CPU sec, 19.833 real sec
[M::process] read 555560 sequences (80000186 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.915 CPU sec, 19.911 real sec
[M::process] read 555558 sequences (80000031 bp)...
[M::mem_process_seqs] Processed 555560 reads in 164.523 CPU sec, 20.224 real sec
[M::process] read 555560 sequences (80000272 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.001 CPU sec, 20.058 real sec
[M::process] read 555558 sequences (80000079 bp)...
[M::mem_process_seqs] Processed 555560 reads in 160.946 CPU sec, 19.744 real sec
[M::process] read 555558 sequences (80000015 bp)...
[M::mem_process_seqs] Processed 555558 reads in 162.386 CPU sec, 19.943 real sec
[M::process] read 255713 sequences (36822558 bp)...
[M::mem_process_seqs] Processed 555558 reads in 160.893 CPU sec, 19.838 real sec
[M::mem_process_seqs] Processed 255713 reads in 77.717 CPU sec, 9.467 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG024\tSM:SekiuWA_FG024\tPL:Illumina reference.fasta SekiuWA_FG024.R1.fq.gz
[main] Real time: 152.593 sec; CPU: 1213.060 sec