[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556180 sequences (80000185 bp)...
[M::process] read 556218 sequences (80000199 bp)...
[M::mem_process_seqs] Processed 556180 reads in 166.048 CPU sec, 20.699 real sec
[M::process] read 556140 sequences (80000163 bp)...
[M::mem_process_seqs] Processed 556218 reads in 169.171 CPU sec, 20.803 real sec
[M::process] read 258945 sequences (37240724 bp)...
[M::mem_process_seqs] Processed 556140 reads in 170.315 CPU sec, 21.000 real sec
[M::mem_process_seqs] Processed 258945 reads in 81.782 CPU sec, 9.975 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG022\tSM:SekiuWA_FG022\tPL:Illumina reference.fasta SekiuWA_FG022.R1.fq.gz
[main] Real time: 75.642 sec; CPU: 589.555 sec