[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000219 bp)...
[M::process] read 555558 sequences (80000110 bp)...
[M::mem_process_seqs] Processed 555560 reads in 159.419 CPU sec, 19.873 real sec
[M::process] read 555560 sequences (80000252 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.668 CPU sec, 19.886 real sec
[M::process] read 555560 sequences (80000282 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.901 CPU sec, 19.885 real sec
[M::process] read 555558 sequences (80000051 bp)...
[M::mem_process_seqs] Processed 555560 reads in 162.055 CPU sec, 19.892 real sec
[M::process] read 555558 sequences (80000092 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.464 CPU sec, 19.823 real sec
[M::process] read 555560 sequences (80000285 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.367 CPU sec, 19.801 real sec
[M::process] read 555558 sequences (80000078 bp)...
[M::mem_process_seqs] Processed 555560 reads in 162.862 CPU sec, 19.979 real sec
[M::process] read 406122 sequences (58481377 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.607 CPU sec, 19.885 real sec
[M::mem_process_seqs] Processed 406122 reads in 119.336 CPU sec, 14.697 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG021\tSM:SekiuWA_FG021\tPL:Illumina reference.fasta SekiuWA_FG021.R1.fq.gz
[main] Real time: 177.669 sec; CPU: 1414.251 sec