[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555774 sequences (80000238 bp)...
[M::process] read 555808 sequences (80000093 bp)...
[M::mem_process_seqs] Processed 555774 reads in 177.688 CPU sec, 22.149 real sec
[M::process] read 555900 sequences (80000272 bp)...
[M::mem_process_seqs] Processed 555808 reads in 181.856 CPU sec, 22.406 real sec
[M::process] read 555900 sequences (80000178 bp)...
[M::mem_process_seqs] Processed 555900 reads in 181.508 CPU sec, 22.310 real sec
[M::process] read 555850 sequences (80000210 bp)...
[M::mem_process_seqs] Processed 555900 reads in 180.583 CPU sec, 22.187 real sec
[M::process] read 555906 sequences (80000255 bp)...
[M::mem_process_seqs] Processed 555850 reads in 181.217 CPU sec, 22.271 real sec
[M::process] read 555918 sequences (80000156 bp)...
[M::mem_process_seqs] Processed 555906 reads in 180.230 CPU sec, 22.162 real sec
[M::process] read 555708 sequences (80000064 bp)...
[M::mem_process_seqs] Processed 555918 reads in 183.497 CPU sec, 22.505 real sec
[M::process] read 555748 sequences (80000116 bp)...
[M::mem_process_seqs] Processed 555708 reads in 183.037 CPU sec, 22.509 real sec
[M::process] read 555762 sequences (80000058 bp)...
[M::mem_process_seqs] Processed 555748 reads in 182.529 CPU sec, 22.446 real sec
[M::process] read 555750 sequences (80000123 bp)...
[M::mem_process_seqs] Processed 555762 reads in 181.243 CPU sec, 22.280 real sec
[M::process] read 555736 sequences (80000054 bp)...
[M::mem_process_seqs] Processed 555750 reads in 181.244 CPU sec, 22.265 real sec
[M::process] read 555790 sequences (80000164 bp)...
[M::mem_process_seqs] Processed 555736 reads in 187.440 CPU sec, 23.063 real sec
[M::process] read 522620 sequences (75221067 bp)...
[M::mem_process_seqs] Processed 555790 reads in 182.134 CPU sec, 22.393 real sec
[M::mem_process_seqs] Processed 522620 reads in 170.725 CPU sec, 21.123 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG020\tSM:SekiuWA_FG020\tPL:Illumina reference.fasta SekiuWA_FG020.R1.fq.gz
[main] Real time: 317.236 sec; CPU: 2537.963 sec