[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000006 bp)...
[M::process] read 555558 sequences (80000022 bp)...
[M::mem_process_seqs] Processed 555558 reads in 157.335 CPU sec, 19.611 real sec
[M::process] read 555560 sequences (80000254 bp)...
[M::mem_process_seqs] Processed 555558 reads in 162.054 CPU sec, 19.889 real sec
[M::process] read 555560 sequences (80000252 bp)...
[M::mem_process_seqs] Processed 555560 reads in 162.725 CPU sec, 20.017 real sec
[M::process] read 555558 sequences (80000084 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.935 CPU sec, 19.841 real sec
[M::process] read 555558 sequences (80000043 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.893 CPU sec, 19.860 real sec
[M::process] read 555558 sequences (80000079 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.704 CPU sec, 20.126 real sec
[M::process] read 72760 sequences (10477417 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.578 CPU sec, 19.957 real sec
[M::mem_process_seqs] Processed 72760 reads in 25.842 CPU sec, 3.041 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG019\tSM:SekiuWA_FG019\tPL:Illumina reference.fasta SekiuWA_FG019.R1.fq.gz
[main] Real time: 145.345 sec; CPU: 1158.982 sec