[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000052 bp)...
[M::process] read 555560 sequences (80000101 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.487 CPU sec, 20.391 real sec
[M::process] read 555562 sequences (80000185 bp)...
[M::mem_process_seqs] Processed 555560 reads in 164.223 CPU sec, 20.163 real sec
[M::process] read 555562 sequences (80000261 bp)...
[M::mem_process_seqs] Processed 555562 reads in 164.910 CPU sec, 20.270 real sec
[M::process] read 555560 sequences (80000244 bp)...
[M::mem_process_seqs] Processed 555562 reads in 164.476 CPU sec, 20.206 real sec
[M::process] read 555560 sequences (80000177 bp)...
[M::mem_process_seqs] Processed 555560 reads in 165.143 CPU sec, 20.322 real sec
[M::process] read 555560 sequences (80000238 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.887 CPU sec, 19.903 real sec
[M::process] read 113472 sequences (16339902 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.905 CPU sec, 20.245 real sec
[M::mem_process_seqs] Processed 113472 reads in 38.651 CPU sec, 4.593 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG018\tSM:SekiuWA_FG018\tPL:Illumina reference.fasta SekiuWA_FG018.R1.fq.gz
[main] Real time: 148.362 sec; CPU: 1188.281 sec