[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000262 bp)...
[M::process] read 555560 sequences (80000245 bp)...
[M::mem_process_seqs] Processed 555560 reads in 158.550 CPU sec, 19.768 real sec
[M::process] read 555560 sequences (80000162 bp)...
[M::mem_process_seqs] Processed 555560 reads in 160.927 CPU sec, 19.757 real sec
[M::process] read 555560 sequences (80000167 bp)...
[M::mem_process_seqs] Processed 555560 reads in 162.977 CPU sec, 19.997 real sec
[M::process] read 555558 sequences (80000022 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.638 CPU sec, 19.858 real sec
[M::process] read 555558 sequences (80000084 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.138 CPU sec, 19.814 real sec
[M::process] read 555558 sequences (80000046 bp)...
[M::mem_process_seqs] Processed 555558 reads in 160.689 CPU sec, 19.751 real sec
[M::process] read 227851 sequences (32810421 bp)...
[M::mem_process_seqs] Processed 555558 reads in 159.086 CPU sec, 19.613 real sec
[M::mem_process_seqs] Processed 227851 reads in 69.113 CPU sec, 8.416 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG017\tSM:SekiuWA_FG017\tPL:Illumina reference.fasta SekiuWA_FG017.R1.fq.gz
[main] Real time: 149.701 sec; CPU: 1195.974 sec