[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000085 bp)...
[M::process] read 555560 sequences (80000218 bp)...
[M::mem_process_seqs] Processed 555558 reads in 161.251 CPU sec, 20.100 real sec
[M::process] read 555560 sequences (80000204 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.315 CPU sec, 20.054 real sec
[M::process] read 555560 sequences (80000248 bp)...
[M::mem_process_seqs] Processed 555560 reads in 163.249 CPU sec, 20.037 real sec
[M::process] read 555558 sequences (80000123 bp)...
[M::mem_process_seqs] Processed 555560 reads in 161.608 CPU sec, 19.781 real sec
[M::process] read 555558 sequences (80000003 bp)...
[M::mem_process_seqs] Processed 555558 reads in 162.334 CPU sec, 19.962 real sec
[M::process] read 490925 sequences (70692920 bp)...
[M::mem_process_seqs] Processed 555558 reads in 163.346 CPU sec, 20.074 real sec
[M::mem_process_seqs] Processed 490925 reads in 143.026 CPU sec, 17.675 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG016\tSM:SekiuWA_FG016\tPL:Illumina reference.fasta SekiuWA_FG016.R1.fq.gz
[main] Real time: 142.376 sec; CPU: 1121.027 sec