[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000058 bp)...
[M::process] read 555558 sequences (80000011 bp)...
[M::mem_process_seqs] Processed 555558 reads in 155.661 CPU sec, 19.400 real sec
[M::process] read 555560 sequences (80000194 bp)...
[M::mem_process_seqs] Processed 555558 reads in 157.937 CPU sec, 19.393 real sec
[M::process] read 555558 sequences (80000109 bp)...
[M::mem_process_seqs] Processed 555560 reads in 157.920 CPU sec, 19.337 real sec
[M::process] read 555558 sequences (80000134 bp)...
[M::mem_process_seqs] Processed 555558 reads in 159.859 CPU sec, 19.648 real sec
[M::process] read 555558 sequences (80000070 bp)...
[M::mem_process_seqs] Processed 555558 reads in 156.295 CPU sec, 19.197 real sec
[M::process] read 444430 sequences (63997729 bp)...
[M::mem_process_seqs] Processed 555558 reads in 160.313 CPU sec, 19.728 real sec
[M::mem_process_seqs] Processed 444430 reads in 128.312 CPU sec, 15.861 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG015\tSM:SekiuWA_FG015\tPL:Illumina reference.fasta SekiuWA_FG015.R1.fq.gz
[main] Real time: 136.762 sec; CPU: 1079.096 sec