[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000197 bp)...
[M::process] read 555560 sequences (80000204 bp)...
[M::mem_process_seqs] Processed 555560 reads in 174.232 CPU sec, 21.741 real sec
[M::process] read 555560 sequences (80000173 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.942 CPU sec, 21.923 real sec
[M::process] read 555560 sequences (80000107 bp)...
[M::mem_process_seqs] Processed 555560 reads in 179.371 CPU sec, 22.045 real sec
[M::process] read 555558 sequences (80000114 bp)...
[M::mem_process_seqs] Processed 555560 reads in 176.549 CPU sec, 21.675 real sec
[M::process] read 555560 sequences (80000249 bp)...
[M::mem_process_seqs] Processed 555558 reads in 178.341 CPU sec, 21.905 real sec
[M::process] read 555560 sequences (80000202 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.315 CPU sec, 21.756 real sec
[M::process] read 423625 sequences (61001726 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.661 CPU sec, 21.864 real sec
[M::mem_process_seqs] Processed 423625 reads in 136.677 CPU sec, 16.829 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG014\tSM:SekiuWA_FG014\tPL:Illumina reference.fasta SekiuWA_FG014.R1.fq.gz
[main] Real time: 174.191 sec; CPU: 1380.848 sec