[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000281 bp)...
[M::process] read 555560 sequences (80000211 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.722 CPU sec, 21.925 real sec
[M::process] read 555560 sequences (80000136 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.329 CPU sec, 22.106 real sec
[M::process] read 555560 sequences (80000222 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.500 CPU sec, 22.207 real sec
[M::process] read 555558 sequences (80000000 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.001 CPU sec, 22.109 real sec
[M::process] read 555558 sequences (80000105 bp)...
[M::mem_process_seqs] Processed 555558 reads in 180.288 CPU sec, 22.133 real sec
[M::process] read 555558 sequences (80000053 bp)...
[M::mem_process_seqs] Processed 555558 reads in 180.380 CPU sec, 22.141 real sec
[M::process] read 555560 sequences (80000266 bp)...
[M::mem_process_seqs] Processed 555558 reads in 180.818 CPU sec, 22.256 real sec
[M::process] read 402413 sequences (57947214 bp)...
[M::mem_process_seqs] Processed 555560 reads in 179.483 CPU sec, 22.116 real sec
[M::mem_process_seqs] Processed 402413 reads in 132.522 CPU sec, 16.337 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG013\tSM:SekiuWA_FG013\tPL:Illumina reference.fasta SekiuWA_FG013.R1.fq.gz
[main] Real time: 197.905 sec; CPU: 1572.979 sec