[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000016 bp)...
[M::process] read 555562 sequences (80000028 bp)...
[M::mem_process_seqs] Processed 555560 reads in 170.200 CPU sec, 21.187 real sec
[M::process] read 555562 sequences (80000148 bp)...
[M::mem_process_seqs] Processed 555562 reads in 173.492 CPU sec, 21.305 real sec
[M::process] read 555560 sequences (80000092 bp)...
[M::mem_process_seqs] Processed 555562 reads in 174.414 CPU sec, 21.469 real sec
[M::process] read 555560 sequences (80000033 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.835 CPU sec, 21.629 real sec
[M::process] read 453475 sequences (65300004 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.113 CPU sec, 21.537 real sec
[M::mem_process_seqs] Processed 453475 reads in 141.122 CPU sec, 17.412 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG011\tSM:SekiuWA_FG011\tPL:Illumina reference.fasta SekiuWA_FG011.R1.fq.gz
[main] Real time: 129.028 sec; CPU: 1013.102 sec