[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000226 bp)...
[M::process] read 555560 sequences (80000058 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.024 CPU sec, 21.587 real sec
[M::process] read 555560 sequences (80000162 bp)...
[M::mem_process_seqs] Processed 555560 reads in 176.710 CPU sec, 21.728 real sec
[M::process] read 555560 sequences (80000266 bp)...
[M::mem_process_seqs] Processed 555560 reads in 178.381 CPU sec, 21.920 real sec
[M::process] read 518632 sequences (74682658 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.316 CPU sec, 21.735 real sec
[M::mem_process_seqs] Processed 518632 reads in 163.214 CPU sec, 20.178 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG010\tSM:SekiuWA_FG010\tPL:Illumina reference.fasta SekiuWA_FG010.R1.fq.gz
[main] Real time: 113.303 sec; CPU: 871.910 sec