[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000092 bp)...
[M::process] read 555560 sequences (80000036 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.484 CPU sec, 22.115 real sec
[M::process] read 555560 sequences (80000086 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.301 CPU sec, 22.162 real sec
[M::process] read 555562 sequences (80000106 bp)...
[M::mem_process_seqs] Processed 555560 reads in 183.237 CPU sec, 22.515 real sec
[M::process] read 555560 sequences (80000000 bp)...
[M::mem_process_seqs] Processed 555562 reads in 180.114 CPU sec, 22.137 real sec
[M::process] read 555560 sequences (80000101 bp)...
[M::mem_process_seqs] Processed 555560 reads in 182.849 CPU sec, 22.493 real sec
[M::process] read 555558 sequences (80000005 bp)...
[M::mem_process_seqs] Processed 555560 reads in 178.836 CPU sec, 21.973 real sec
[M::process] read 555560 sequences (80000268 bp)...
[M::mem_process_seqs] Processed 555558 reads in 180.549 CPU sec, 22.242 real sec
[M::process] read 555560 sequences (80000129 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.347 CPU sec, 22.174 real sec
[M::process] read 555560 sequences (80000227 bp)...
[M::mem_process_seqs] Processed 555560 reads in 182.146 CPU sec, 22.379 real sec
[M::process] read 275350 sequences (39650147 bp)...
[M::mem_process_seqs] Processed 555560 reads in 181.507 CPU sec, 22.397 real sec
[M::mem_process_seqs] Processed 275350 reads in 93.437 CPU sec, 11.478 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG009\tSM:SekiuWA_FG009\tPL:Illumina reference.fasta SekiuWA_FG009.R1.fq.gz
[main] Real time: 237.816 sec; CPU: 1903.057 sec