[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555562 sequences (80000246 bp)...
[M::process] read 555562 sequences (80000136 bp)...
[M::mem_process_seqs] Processed 555562 reads in 165.464 CPU sec, 20.618 real sec
[M::process] read 555564 sequences (80000246 bp)...
[M::mem_process_seqs] Processed 555562 reads in 170.465 CPU sec, 20.994 real sec
[M::process] read 555562 sequences (80000284 bp)...
[M::mem_process_seqs] Processed 555564 reads in 169.984 CPU sec, 20.884 real sec
[M::process] read 555560 sequences (80000085 bp)...
[M::mem_process_seqs] Processed 555562 reads in 168.916 CPU sec, 20.713 real sec
[M::process] read 555560 sequences (80000080 bp)...
[M::mem_process_seqs] Processed 555560 reads in 170.009 CPU sec, 20.880 real sec
[M::process] read 187499 sequences (26999628 bp)...
[M::mem_process_seqs] Processed 555560 reads in 167.132 CPU sec, 20.617 real sec
[M::mem_process_seqs] Processed 187499 reads in 63.050 CPU sec, 7.654 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG007\tSM:SekiuWA_FG007\tPL:Illumina reference.fasta SekiuWA_FG007.R1.fq.gz
[main] Real time: 134.876 sec; CPU: 1076.814 sec